Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq50985 131 2e-25 seq50789 131 2e-25 seq50610 131 2e-25 seq50609 131 2e-25 >seq50985 Length=2480 Score = 131 bits (144), Expect = 2e-25 Identities = 372/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 799 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 740 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 681 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || | | || | Sbjct 680 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 621 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 620 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 561 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 560 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 501 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 500 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 441 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 440 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 381 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 380 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCC 322 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 321 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 263 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 262 TTCTTGTACATCTCCCAGATG 242 >seq50789 Length=2477 Score = 131 bits (144), Expect = 2e-25 Identities = 372/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1679 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1738 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 1739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1797 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || | | || | Sbjct 1798 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 1857 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 1858 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1917 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 1918 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1977 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 1978 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2037 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 2038 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2097 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 2098 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCC 2156 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 2157 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2215 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 2216 TTCTTGTACATCTCCCAGATG 2236 >seq50610 Length=4059 Score = 131 bits (144), Expect = 2e-25 Identities = 372/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3708 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3649 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 3648 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3590 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || | | || | Sbjct 3589 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3530 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 3529 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3470 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 3469 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3410 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 3409 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3350 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 3349 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3290 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 3289 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCC 3231 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 3230 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3172 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 3171 TTCTTGTACATCTCCCAGATG 3151 >seq50609 Length=4102 Score = 131 bits (144), Expect = 2e-25 Identities = 372/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3751 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3692 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 3691 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3633 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || | | || | Sbjct 3632 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3573 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || || | |||| ||||| || || Sbjct 3572 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3513 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 3512 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3453 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 3452 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3393 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 3392 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3333 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || |||| || || || || || | | ||||| | |||| || | || Sbjct 3332 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCC 3274 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 3273 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3215 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 3214 TTCTTGTACATCTCCCAGATG 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633097697736400