Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq65762 116 3e-21 seq64861 114 1e-20 seq63448 114 1e-20 seq55626 107 2e-18 seq64025 104 2e-17 seq47019 89.7 4e-13 seq21179 86.0 5e-12 >seq65762 Length=1559 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| ||||||| || ||||||| |||| || ||| Sbjct 839 AACAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAG 780 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| |||||| ||||||| || ||| ||||| ||||| || || || || Sbjct 779 CTCGGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGA 720 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| || || || | || || | ||||| | | ||| || Sbjct 719 CCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 660 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || |||||||| || Sbjct 659 CAACATCCAGAAGGAGTCCACGCTCCA 633 >seq64861 Length=3609 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 1531 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1472 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 1471 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1412 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| ||| ||| ||||| Sbjct 1411 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1352 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || |||||||| || Sbjct 1351 ATCCAGAAGGAGTCCACGCTCCA 1329 >seq63448 Length=5210 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| || Sbjct 3980 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 4039 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 4040 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 4099 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| ||| ||| ||||| Sbjct 4100 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTGGCCGACTACAAC 4159 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || |||||||| || Sbjct 4160 ATCCAGAAGGAGTCCACGCTCCA 4182 >seq55626 Length=4059 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || || ||||| | ||||| || ||||||| |||| || ||||| Sbjct 3765 AACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTC 3824 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| | |||||||| ||| ||||| || || ||||| || || Sbjct 3825 CAGCGACACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCTCCCGA 3884 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||||||||| || | || || | || || ||| ||| || Sbjct 3885 TCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTA 3944 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || ||||| || || Sbjct 3945 CAACATCCAGAAGGAGTCCACCCTCCA 3971 >seq64025 Length=5555 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| ||||||| || |||| || |||| || ||||| Sbjct 1715 AACAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTC 1656 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| |||||||||| ||| ||||| || || || || ||||| Sbjct 1655 CAGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 1596 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | || || | || || | | ||| || Sbjct 1595 TCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACACTCGCCGACTA 1536 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || ||||| || || Sbjct 1535 CAACATCCAGAAGGAGTCCACCCTTCA 1509 >seq47019 Length=2080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| | ||||| || |||| || |||| || ||| Sbjct 759 AACAATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGAG 700 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| |||||| ||||||| || ||| || || || || || || ||||| Sbjct 699 CTCGGACACGATCGAGAACGTGAAGCAGAAGATCCAGGATAAGGAGGGCATCCCTCCTGA 640 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | || || | ||||| | | || || Sbjct 639 TCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTA 580 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || ||||| || || Sbjct 579 CAACATCCAGAAGGAGTCCACCCTCCA 553 >seq21179 Length=175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || || || ||||| | || ||||| | ||||| |||| || |||||||| || Sbjct 1 GCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 60 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| |||||| ||||||| || || ||||| || || || || ||||| || || Sbjct 61 CACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAGCA 120 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||| | || ||||||||||| || | || || | || || ||| ||| ||| Sbjct 121 GCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTAC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432971736541085