Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq66303 82.4 8e-11 seq66302 82.4 8e-11 seq64900 82.4 8e-11 seq63535 82.4 8e-11 >seq66303 Length=5292 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 4818 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 4759 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 4758 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 4699 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 4698 GATCTCGGCAACGTCGTGGC 4679 >seq66302 Length=7949 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 7475 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 7416 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 7415 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 7356 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 7355 GATCTCGGCAACGTCGTGGC 7336 >seq64900 Length=2396 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 2141 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2200 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 2201 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2260 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 2261 GATCTCGGCAACGTCGTGGC 2280 >seq63535 Length=2404 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||||| |||||||||||||||| | ||||| ||| | ||||| | Sbjct 2149 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2208 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| ||| ||| | | | ||||| | ||| ||| | |||||||||||| Sbjct 2209 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2268 Query 127664 GACCTGGGCAACGTGGAGGC 127683 || || |||||||| | ||| Sbjct 2269 GATCTCGGCAACGTCGTGGC 2288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537149872821640