Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq50985 105 7e-18 seq50789 105 7e-18 seq50610 105 7e-18 seq50609 105 7e-18 >seq50985 Length=2480 Score = 105 bits (116), Expect = 7e-18 Identities = 378/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 763 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 705 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 704 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 645 Query 93247 GGCAAAATTTGCGGAA---TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | || ||||||| || | ||||| ||||| || ||||| Sbjct 644 GGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 585 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| | | || | Sbjct 584 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGAC 525 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 524 GTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 465 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | ||| || || | || | | ||||||| Sbjct 464 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATT 405 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || |||| | ||||| || || || | Sbjct 404 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCT 345 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 344 CTCGTCGTTGTTGAGCGACTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 288 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 287 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 228 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 227 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 183 >seq50789 Length=2477 Score = 105 bits (116), Expect = 7e-18 Identities = 378/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 1715 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 1773 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 1774 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 1833 Query 93247 GGCAAAATTTGCGGAA---TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | || ||||||| || | ||||| ||||| || ||||| Sbjct 1834 GGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 1893 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| | | || | Sbjct 1894 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGAC 1953 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 1954 GTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 2013 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | ||| || || | || | | ||||||| Sbjct 2014 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATT 2073 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || |||| | ||||| || || || | Sbjct 2074 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCT 2133 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 2134 CTCGTCGTTGTTGAGCGACTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 2190 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 2191 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 2250 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 2251 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 2295 >seq50610 Length=4059 Score = 105 bits (116), Expect = 7e-18 Identities = 378/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 3672 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 3614 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 3613 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 3554 Query 93247 GGCAAAATTTGCGGAA---TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | || ||||||| || | ||||| ||||| || ||||| Sbjct 3553 GGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 3494 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| | | || | Sbjct 3493 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGAC 3434 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 3433 GTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 3374 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | ||| || || | || | | ||||||| Sbjct 3373 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATT 3314 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || |||| | ||||| || || || | Sbjct 3313 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCT 3254 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 3253 CTCGTCGTTGTTGAGCGACTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 3197 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 3196 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 3137 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 3136 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 3092 >seq50609 Length=4102 Score = 105 bits (116), Expect = 7e-18 Identities = 378/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 3715 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 3657 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 3656 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 3597 Query 93247 GGCAAAATTTGCGGAA---TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | || ||||||| || | ||||| ||||| || ||||| Sbjct 3596 GGCGAAGGTCTCGACACCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 3537 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| | | || | Sbjct 3536 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGAC 3477 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 3476 GTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 3417 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | ||| || || | || | | ||||||| Sbjct 3416 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATT 3357 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || |||| | ||||| || || || | Sbjct 3356 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCT 3297 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 3296 CTCGTCGTTGTTGAGCGACTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 3240 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 3239 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 3180 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 3179 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 3135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556391234091160