Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq55626 98.7 8e-16 seq64025 93.3 3e-14 seq61750 91.5 1e-13 seq37491 91.5 1e-13 seq61737 89.7 4e-13 seq47541 87.8 1e-12 seq33364 87.8 1e-12 seq64861 84.2 2e-11 seq33763 82.4 6e-11 >seq55626 Length=4059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || |||| || Sbjct 3986 AGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGG 3927 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||||||||| || |||||||||||||| || | || ||| Sbjct 3926 CCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGAGGAATGCCCTCC 3867 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | | || | || ||| |||| || Sbjct 3866 TTGTCCTGGATCTTTTGCTTGA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGT 3808 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| ||||| |||||| || Sbjct 3807 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 3765 >seq64025 Length=5555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | | || Sbjct 1494 AGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGG 1553 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || || ||||||||||| || | || ||| Sbjct 1554 CCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCC 1613 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | | || | || ||| |||| || Sbjct 1614 TTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGT 1672 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| |||||||||||| || Sbjct 1673 AATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTGTT 1715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | || Sbjct 810 AGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGA 869 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||||||| || | || ||| Sbjct 870 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCC 929 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 930 TTGTCCTGGATCTTCTGCTT 949 >seq61750 Length=9220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || ||||| ||||||||| |||||||| || |||| || Sbjct 3748 AGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGG 3807 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || || | || ||| Sbjct 3808 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 3867 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | |||| | || ||| |||| || Sbjct 3868 TTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGACCTCGAGAGT 3926 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||| ||||| Sbjct 3927 AATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 3965 >seq37491 Length=1671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || ||| ||||||||| |||||||| || |||| || Sbjct 386 AGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 445 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || || ||||||||||| || | || ||| Sbjct 446 CCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCC 505 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| |||||||| | | ||| | | || | || ||| |||| || Sbjct 506 TTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGT 564 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || ||||| ||||| ||||| Sbjct 565 AATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 603 >seq61737 Length=2782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || || ||||||||| |||||||| || || | || Sbjct 2092 AGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGG 2033 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || ||||||||||| || || | || ||| Sbjct 2032 CCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 1973 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||||| | | ||| | | || | || ||| ||||| || Sbjct 1972 TTGTCCTGAATCTTCTGCTTGA-CGTTCTCGATGGTGTCGCTGGACTCGACTTCGAGGGT 1914 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATGTG 34139 || || || ||||| || || ||||| ||||| |||||| || |||||| Sbjct 1913 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTGCTATGTG 1863 >seq47541 Length=1677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 1157 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 1216 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| || ||| Sbjct 1217 AGCGTGCGGCCGTCCTCTAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 1276 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TCGC 34078 | || ||| |||||| || || ||||| | | |||| | | || | || | ||| Sbjct 1277 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTCTCAATCGTGTCCG-AGCTCTCGA 1334 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 1335 CTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 1383 >seq33364 Length=844 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || ||||| || ||||||||| |||||||| || |||| | || | Sbjct 215 AGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGG 274 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | |||||||| || || || || ||||||||||| || | || ||| Sbjct 275 C-CGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTC 333 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | ||| | |||| | || ||| |||| | Sbjct 334 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGG 392 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| || || ||||| ||||| |||||| || Sbjct 393 TGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 436 >seq64861 Length=3609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || ||| Sbjct 674 CCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 733 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| || || || || || |||||||||||| || Sbjct 734 AGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGGGGG 793 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || |||||||| | | ||| | |||| | || ||| Sbjct 794 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTCGACTCGAC 852 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 853 CTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || ||||| ||||||||| |||||||| || || Sbjct 2136 CCGCCACGCAGACGAAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2195 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| || || Sbjct 2196 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2255 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 2256 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGAC 2314 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 2315 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2362 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || |||||| ||||||||| |||||||| || |||| || Sbjct 1314 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1373 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||||||||| || ||||||||||| || || | || ||| Sbjct 1374 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 1433 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 1434 TTGTCCTGGATCTTCTGCTT 1453 >seq33763 Length=823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | || Sbjct 191 AGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGG 250 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||| || || || || |||||||||||||| || | || ||| Sbjct 251 CCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCC 310 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| |||||||| | | ||| | | || | || ||| |||| || Sbjct 311 TTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGT 369 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||| ||||| Sbjct 370 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396735952542118