Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq50985 141 2e-28 seq50789 141 2e-28 seq50610 141 2e-28 seq50609 141 2e-28 >seq50985 Length=2480 Score = 141 bits (156), Expect = 2e-28 Identities = 551/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 222 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 281 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| ||| ||||| || Sbjct 282 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAGTCGCTCAACAAC 338 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | || | || ||||| |||| ||| || || || Sbjct 339 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 397 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| ||| ||| || ||||| || | Sbjct 398 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTACAGGTGCCCGAGGCGCGCTGCT 456 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || || |||| Sbjct 457 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCG 516 Query 243173 ACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACAT 243230 || | || ||| || | ||| || || ||| ||||||||| | | | Sbjct 517 ACACC--TACGTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 574 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCT-----AGAACCCGGTAAA 243285 || |||| | || ||||| | ||||| ||||||| | || | || | Sbjct 575 GCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGA 634 Query 243286 T-CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | || || ||||||||||||| | | ||| || || || | || ||||| || Sbjct 635 GACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAG 694 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||||||| ||||| ||| || | ||||| ||||||| | ||| Sbjct 695 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAA 754 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| ||||| |||||||| ||| | |||| || | || | | Sbjct 755 CGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCAT 814 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||| ||||||| | ||| | ||| || |||||| || || || || | Sbjct 815 GCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGAT 874 Query 243525 CGAAAAGGAATTCATT--TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 || ||||||||| | || | |||| | ||| || || ||||||||| | || Sbjct 875 TGAGAAGGAATTCGTGACTGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAACGCCGAC 932 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | || Sbjct 933 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGAC 992 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | ||||| || | | ||||||||||| || || | || || Sbjct 993 AAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAG 1052 Query 243703 ACTAACTTCTTCGAA 243717 || |||||||||||| Sbjct 1053 ACCAACTTCTTCGAA 1067 >seq50789 Length=2477 Score = 141 bits (156), Expect = 2e-28 Identities = 551/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2256 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 2197 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| ||| ||||| || Sbjct 2196 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAGTCGCTCAACAAC 2140 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | || | || ||||| |||| ||| || || || Sbjct 2139 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 2081 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| ||| ||| || ||||| || | Sbjct 2080 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTACAGGTGCCCGAGGCGCGCTGCT 2022 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || || |||| Sbjct 2021 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCG 1962 Query 243173 ACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACAT 243230 || | || ||| || | ||| || || ||| ||||||||| | | | Sbjct 1961 ACACC--TACGTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 1904 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCT-----AGAACCCGGTAAA 243285 || |||| | || ||||| | ||||| ||||||| | || | || | Sbjct 1903 GCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGA 1844 Query 243286 T-CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | || || ||||||||||||| | | ||| || || || | || ||||| || Sbjct 1843 GACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAG 1784 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||||||| ||||| ||| || | ||||| ||||||| | ||| Sbjct 1783 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAA 1724 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| ||||| |||||||| ||| | |||| || | || | | Sbjct 1723 CGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCAT 1664 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||| ||||||| | ||| | ||| || |||||| || || || || | Sbjct 1663 GCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGAT 1604 Query 243525 CGAAAAGGAATTCATT--TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 || ||||||||| | || | |||| | ||| || || ||||||||| | || Sbjct 1603 TGAGAAGGAATTCGTGACTGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAACGCCGAC 1546 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | || Sbjct 1545 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGAC 1486 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | ||||| || | | ||||||||||| || || | || || Sbjct 1485 AAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAG 1426 Query 243703 ACTAACTTCTTCGAA 243717 || |||||||||||| Sbjct 1425 ACCAACTTCTTCGAA 1411 >seq50610 Length=4059 Score = 141 bits (156), Expect = 2e-28 Identities = 551/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 3131 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 3190 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| ||| ||||| || Sbjct 3191 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAGTCGCTCAACAAC 3247 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | || | || ||||| |||| ||| || || || Sbjct 3248 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 3306 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| ||| ||| || ||||| || | Sbjct 3307 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTACAGGTGCCCGAGGCGCGCTGCT 3365 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || || |||| Sbjct 3366 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCG 3425 Query 243173 ACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACAT 243230 || | || ||| || | ||| || || ||| ||||||||| | | | Sbjct 3426 ACACC--TACGTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 3483 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCT-----AGAACCCGGTAAA 243285 || |||| | || ||||| | ||||| ||||||| | || | || | Sbjct 3484 GCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGA 3543 Query 243286 T-CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | || || ||||||||||||| | | ||| || || || | || ||||| || Sbjct 3544 GACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAG 3603 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||||||| ||||| ||| || | ||||| ||||||| | ||| Sbjct 3604 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAA 3663 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| ||||| |||||||| ||| | |||| || | || | | Sbjct 3664 CGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCAT 3723 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||| ||||||| | ||| | ||| || |||||| || || || || | Sbjct 3724 GCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGAT 3783 Query 243525 CGAAAAGGAATTCATT--TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 || ||||||||| | || | |||| | ||| || || ||||||||| | || Sbjct 3784 TGAGAAGGAATTCGTGACTGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAACGCCGAC 3841 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | || Sbjct 3842 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGAC 3901 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | ||||| || | | ||||||||||| || || | || || Sbjct 3902 AAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAG 3961 Query 243703 ACTAACTTCTTCGAA 243717 || |||||||||||| Sbjct 3962 ACCAACTTCTTCGAA 3976 >seq50609 Length=4102 Score = 141 bits (156), Expect = 2e-28 Identities = 551/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 3174 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 3233 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| ||| ||||| || Sbjct 3234 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAGTCGCTCAACAAC 3290 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | || | || ||||| |||| ||| || || || Sbjct 3291 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 3349 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| ||| ||| || ||||| || | Sbjct 3350 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTACAGGTGCCCGAGGCGCGCTGCT 3408 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || || |||| Sbjct 3409 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCG 3468 Query 243173 ACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACAT 243230 || | || ||| || | ||| || || ||| ||||||||| | | | Sbjct 3469 ACACC--TACGTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 3526 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCT-----AGAACCCGGTAAA 243285 || |||| | || ||||| | ||||| ||||||| | || | || | Sbjct 3527 GCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGA 3586 Query 243286 T-CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | || || ||||||||||||| | | ||| || || || | || ||||| || Sbjct 3587 GACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAG 3646 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||||||| ||||| ||| || | ||||| ||||||| | ||| Sbjct 3647 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAA 3706 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| ||||| |||||||| ||| | |||| || | || | | Sbjct 3707 CGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCAT 3766 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 |||| ||||||| | ||| | ||| || |||||| || || || || | Sbjct 3767 GCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGAT 3826 Query 243525 CGAAAAGGAATTCATT--TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 || ||||||||| | || | |||| | ||| || || ||||||||| | || Sbjct 3827 TGAGAAGGAATTCGTGACTGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAACGCCGAC 3884 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | || Sbjct 3885 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGAC 3944 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | ||||| || | | ||||||||||| || || | || || Sbjct 3945 AAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAG 4004 Query 243703 ACTAACTTCTTCGAA 243717 || |||||||||||| Sbjct 4005 ACCAACTTCTTCGAA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101926760481650