Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq64861 109 5e-19 seq61737 89.7 5e-13 seq67000 86.0 6e-12 >seq64861 Length=3609 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || ||||| || ||||| ||||| || || ||| Sbjct 1905 ATGCCACCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 1964 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | || || || ||| | || | || ||||||||||| Sbjct 1965 GCGAGCGTGCGACCGTCCTCAAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCCGGG 2024 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || ||||| || ||||| || | || | || | ||| ||| ||||| Sbjct 2025 GGGATGCCCTCCTTGTCTTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTCGACTC 2083 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| |||||||||| ||| |||||||| || || || || || || ||||| ||| || Sbjct 2084 GACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCAC 2142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || || || || || || ||||||||||| || || ||| Sbjct 1677 ATGCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCG 1736 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | || ||||||||||| Sbjct 1737 GCGAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCCGGG 1796 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || ||||| ||||| || | || | || | |||||| || ||| Sbjct 1797 GGGATGCCTTCCTTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATGGTGTCAGAGCTCTC 1855 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| || || || || || || ||||| Sbjct 1856 GACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1906 >seq61737 Length=2782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 2104 ATGCCACCACGGAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCA 2045 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | || |||||||| || Sbjct 2044 GCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGG 1985 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || || |||| || | || | ||||||| ||||| Sbjct 1984 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGA-CGTTCTCGATGGTGTCGCTGGACTC 1926 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | || |||||||| || || || || || || ||||| Sbjct 1925 GACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1875 >seq67000 Length=10850 Score = 86.0 bits (94), Expect = 6e-12 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 684 CCACCGCGCAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 743 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || ||||||||||| ||| Sbjct 744 AGCGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 803 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || || || | || | || | |||||| |||||||| Sbjct 804 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 862 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 ||||| |||| ||| |||||||| || || || || || || ||||| ||| || || Sbjct 863 CTCGAGGGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATACCGCCACGAA 921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451622053951640