Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq58068 192 9e-44 seq54405 192 9e-44 seq54404 192 9e-44 >seq58068 Length=5899 Score = 192 bits (212), Expect = 9e-44 Identities = 527/783 (67%), Gaps = 26/783 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || |||||||| || ||||| |||| |||| | | | || ||||||||||| Sbjct 3561 CTGGTCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCC 3620 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGG 203957 |||||| |||||||| |||| |||| | |||||| || | || || || ||| || Sbjct 3621 GGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGG 3679 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | ||| |||||| | ||| || |||||||| ||||||||| | | || ||||| |||| Sbjct 3680 GCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGG 3739 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || || Sbjct 3740 CCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATG 3798 Query 204077 T-GTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | || | || |||| | | | | || || ||||||||||| | | || | || Sbjct 3799 TCGTCGGGG---ATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTTC 3855 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | | | ||| | | || ||| | ||||| |||| ||||| ||||| Sbjct 3856 TTGAGCGCGGGCGACCAGA-GGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGAC 3914 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || ||||| |||| || | | |||||| | | |||| | ||| | || || || Sbjct 3915 GACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAA 3974 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || Sbjct 3975 GCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAG 4034 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||||||| ||||| | || | |||| || | || |||||| | | Sbjct 4035 CGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGT 4093 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGC 204428 | || |||||||| | |||| ||| | || ||||| ||| |||| || Sbjct 4094 CCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGC 4150 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488 ||| ||| ||| | || | || | | || |||| | ||||||| ||| |||| Sbjct 4151 CCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGG 4210 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAA 204545 ||||| |||||||| ||||| | || || | || || |||||| || || || Sbjct 4211 CGTAGTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCC 4267 Query 204546 ACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTC 204605 ||| | | ||| || || ||||| |||| ||||||||||||||| || | || | Sbjct 4268 ACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCC 4327 Query 204606 TGT 204608 ||| Sbjct 4328 TGT 4330 >seq54405 Length=5848 Score = 192 bits (212), Expect = 9e-44 Identities = 527/783 (67%), Gaps = 26/783 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || |||||||| || ||||| |||| |||| | | | || ||||||||||| Sbjct 5707 CTGGTCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCC 5648 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGG 203957 |||||| |||||||| |||| |||| | |||||| || | || || || ||| || Sbjct 5647 GGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGG 5589 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | ||| |||||| | ||| || |||||||| ||||||||| | | || ||||| |||| Sbjct 5588 GCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGG 5529 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || || Sbjct 5528 CCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATG 5470 Query 204077 T-GTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | || | || |||| | | | | || || ||||||||||| | | || | || Sbjct 5469 TCGTCGGGG---ATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTTC 5413 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | | | ||| | | || ||| | ||||| |||| ||||| ||||| Sbjct 5412 TTGAGCGCGGGCGACCAGA-GGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGAC 5354 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || ||||| |||| || | | |||||| | | |||| | ||| | || || || Sbjct 5353 GACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAA 5294 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || Sbjct 5293 GCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAG 5234 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||||||| ||||| | || | |||| || | || |||||| | | Sbjct 5233 CGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGT 5175 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGC 204428 | || |||||||| | |||| ||| | || ||||| ||| |||| || Sbjct 5174 CCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGC 5118 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488 ||| ||| ||| | || | || | | || |||| | ||||||| ||| |||| Sbjct 5117 CCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGG 5058 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAA 204545 ||||| |||||||| ||||| | || || | || || |||||| || || || Sbjct 5057 CGTAGTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCC 5001 Query 204546 ACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTC 204605 ||| | | ||| || || ||||| |||| ||||||||||||||| || | || | Sbjct 5000 ACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCC 4941 Query 204606 TGT 204608 ||| Sbjct 4940 TGT 4938 >seq54404 Length=5758 Score = 192 bits (212), Expect = 9e-44 Identities = 527/783 (67%), Gaps = 26/783 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || |||||||| || ||||| |||| |||| | | | || ||||||||||| Sbjct 5617 CTGGTCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCC 5558 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGG 203957 |||||| |||||||| |||| |||| | |||||| || | || || || ||| || Sbjct 5557 GGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGG 5499 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | ||| |||||| | ||| || |||||||| ||||||||| | | || ||||| |||| Sbjct 5498 GCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGG 5439 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || || Sbjct 5438 CCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATG 5380 Query 204077 T-GTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | || | || |||| | | | | || || ||||||||||| | | || | || Sbjct 5379 TCGTCGGGG---ATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTTC 5323 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | | | ||| | | || ||| | ||||| |||| ||||| ||||| Sbjct 5322 TTGAGCGCGGGCGACCAGA-GGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGAC 5264 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || ||||| |||| || | | |||||| | | |||| | ||| | || || || Sbjct 5263 GACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAA 5204 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || Sbjct 5203 GCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAG 5144 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||||||| ||||| | || | |||| || | || |||||| | | Sbjct 5143 CGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGT 5085 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGC 204428 | || |||||||| | |||| ||| | || ||||| ||| |||| || Sbjct 5084 CCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGC 5028 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488 ||| ||| ||| | || | || | | || |||| | ||||||| ||| |||| Sbjct 5027 CCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGG 4968 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAA 204545 ||||| |||||||| ||||| | || || | || || |||||| || || || Sbjct 4967 CGTAGTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCC 4911 Query 204546 ACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTC 204605 ||| | | ||| || || ||||| |||| ||||||||||||||| || | || | Sbjct 4910 ACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCC 4851 Query 204606 TGT 204608 ||| Sbjct 4850 TGT 4848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794484695317040