Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq64861 87.8 1e-12 seq65762 82.4 6e-11 seq21179 82.4 6e-11 >seq64861 Length=3609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || | || | ||| |||| || | |||| Sbjct 1932 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCAAGCTGC 1991 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| || || || || ||||| || |||| ||| | |||||||||||| |||||| Sbjct 1992 TTACCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTT 2051 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || ||| ||||| | |||||||| || || ||| Sbjct 2052 TGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTTGCCGGTC 2111 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 2112 AGGGTCTTGACGAAGATCTGCAT 2134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | || |||| || | |||| Sbjct 698 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 757 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| || || || || ||||| ||||||| ||| | |||||||||||| |||||| Sbjct 758 TTACCCGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTT 817 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || ||| ||||| | ||||| || || || ||| Sbjct 818 TGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 877 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 878 AGCGTCTTGACGAAGATCTGCAT 900 >seq65762 Length=1559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | || |||| || | |||| Sbjct 177 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 236 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || || | ||| | |||||||||||| ||||| Sbjct 237 TTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTC 296 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | |||||||| || || ||| Sbjct 297 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTC 356 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 357 AGGGTCTTGACGAAGATCTGCAT 379 >seq21179 Length=175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 |||| || | |||||| |||||||| || || ||||| ||||| | ||| | |||||||| Sbjct 155 CGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCT 96 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 |||| |||||| || || || | | | || |||| ||| ||||| | || | Sbjct 95 TGTCCTGAATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 36 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 |||| || ||||| | || || || || |||||| Sbjct 35 TCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380624409652257