Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq33364 93.3 3e-13 seq67280 91.5 1e-12 seq61268 91.5 1e-12 seq41891 91.5 1e-12 seq37491 91.5 1e-12 seq51432 89.7 3e-12 seq42260 89.7 3e-12 seq67000 86.0 4e-11 >seq33364 Length=844 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| || || || | || || || || ||||| Sbjct 211 ACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGT 270 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || || ||||| ||||| || || ||||| || ||||||||||| || || Sbjct 271 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCC 330 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| || || || || || ||||| || || || Sbjct 331 CTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAG 390 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| ||||| || || Sbjct 391 GGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTG 429 >seq67280 Length=3536 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||| ||||| ||| Sbjct 601 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGAATTGTGCAT 542 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 541 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 489 >seq61268 Length=3493 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||| ||||| ||| Sbjct 2893 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGAATTGTGCAT 2952 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 2953 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 3005 >seq41891 Length=1849 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||| ||||| ||| Sbjct 790 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGAATTGTGCAT 731 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 730 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 678 >seq37491 Length=1671 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| || || || || ||| ||| || | || || || || || || Sbjct 155 CGCAGACGGAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTA 214 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||| ||||| || || ||||| || || || ||||| || || Sbjct 215 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 274 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 |||||||| ||||||||||| || || || || || || | | | | | || || Sbjct 275 TCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGA-CCTCGAG 333 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || ||||| |||||||| ||||| || || Sbjct 334 GGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTG 372 >seq51432 Length=7346 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || |||||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 1042 AAGGTCGCCTATCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 983 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || ||| || Sbjct 982 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGCGT 926 >seq42260 Length=864 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || || || || ||||| ||| | ||||| || ||||| || || Sbjct 366 AAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCAC 425 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 || ||||||||||| || || || || || || | || ||||| || || ||||| || Sbjct 426 AGGGATCTCAAGTCACTCAACCTGCTGCTCGACGCCAAGTGGAACGTCAAGGTGAGCGAC 485 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| | || ||||| Sbjct 486 TTTGGCCTCACCAAGTT 502 >seq67000 Length=10850 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || || || || ||||| |||||||| || |||||| Sbjct 1251 TCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTG 1310 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || ||||||||||| ||||| || || ||||| || || ||||| || Sbjct 1311 TCCTGAATCTTTTGCTTGACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATG 1370 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| || || Sbjct 1371 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTG 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265285556178932