Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq34795 93.3 1e-14 >seq34795 Length=6479 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 2325 TGGTCGTAGTGGTAGGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGAGCGCGTG 2384 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 2385 GGCCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 2442 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || || |||| Sbjct 2443 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATGAGGT 2502 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 2503 CTTTGGGCTTTAAGCCATTTGG 2524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129998178138606