Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58068 105 8e-18 seq54405 105 8e-18 seq54404 105 8e-18 seq50985 95.1 1e-14 seq50789 95.1 1e-14 seq50610 95.1 1e-14 seq50609 95.1 1e-14 >seq58068 Length=5899 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 5487 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 5430 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 5429 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 5370 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 5369 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCTACCCCGA 5310 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 5309 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 5250 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 5249 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 5190 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 5189 CGGCCGGCGGCATCGG 5174 >seq54405 Length=5848 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 3781 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 3838 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 3839 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 3898 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 3899 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCTACCCCGA 3958 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 3959 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 4018 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 4019 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 4078 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 4079 CGGCCGGCGGCATCGG 4094 >seq54404 Length=5758 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 3691 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 3748 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 3749 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 3808 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 3809 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCTACCCCGA 3868 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 3869 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 3928 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 3929 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 3988 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 3989 CGGCCGGCGGCATCGG 4004 >seq50985 Length=2480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/395 (67%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG--TCTCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || | ||| ||||||||| Sbjct 586 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCG 645 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 646 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 705 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 706 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 765 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 766 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 822 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 823 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAG 881 Query 65314 GGGTTCAT--CTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | ||| | || | ||| | ||| || |||||||| |||||| | || |||| Sbjct 882 GAATTCGTGACTGAGTCGCTC-CCCGTG-GCCCTCATCGGCATGAACGCCGACCTCATGT 939 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | ||||||| |||| || | || || |||||| Sbjct 940 GCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 974 >seq50789 Length=2477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/395 (67%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG--TCTCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || | ||| ||||||||| Sbjct 1892 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCG 1833 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 1832 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 1773 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 1772 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 1713 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 1712 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 1656 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 1655 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAG 1597 Query 65314 GGGTTCAT--CTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | ||| | || | ||| | ||| || |||||||| |||||| | || |||| Sbjct 1596 GAATTCGTGACTGAGTCGCTC-CCCGTG-GCCCTCATCGGCATGAACGCCGACCTCATGT 1539 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | ||||||| |||| || | || || |||||| Sbjct 1538 GCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1504 >seq50610 Length=4059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/395 (67%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG--TCTCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || | ||| ||||||||| Sbjct 3495 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCG 3554 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 3555 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 3614 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 3615 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 3674 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 3675 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 3731 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 3732 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAG 3790 Query 65314 GGGTTCAT--CTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | ||| | || | ||| | ||| || |||||||| |||||| | || |||| Sbjct 3791 GAATTCGTGACTGAGTCGCTC-CCCGTG-GCCCTCATCGGCATGAACGCCGACCTCATGT 3848 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | ||||||| |||| || | || || |||||| Sbjct 3849 GCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 3883 >seq50609 Length=4102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/395 (67%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG--TCTCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || | ||| ||||||||| Sbjct 3538 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCG 3597 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 3598 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 3657 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 3658 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 3717 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 3718 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 3774 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 3775 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAG 3833 Query 65314 GGGTTCAT--CTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | ||| | || | ||| | ||| || |||||||| |||||| | || |||| Sbjct 3834 GAATTCGTGACTGAGTCGCTC-CCCGTG-GCCCTCATCGGCATGAACGCCGACCTCATGT 3891 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | ||||||| |||| || | || || |||||| Sbjct 3892 GCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 3926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596066550141920