Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq62774 111 5e-19 >seq62774 Length=6078 Score = 111 bits (122), Expect = 5e-19 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 765 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 824 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 | ||| || || | | | ||| |||| ||||| ||||||| ||| || | | Sbjct 825 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCACGCGACTCCGGACCAAAG 884 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| ||| |||||| ||||| || | || ||| | | ||||| ||||| || Sbjct 885 TCGTCCTTCACAAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGCCC 944 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCT 302857 || ||||||||||| |||| ||| | || || |||||| || || ||| | | |||| Sbjct 945 TCGACGTTCTGCTGACCCACGCAGGCAAGCACCTGCGAGATGTT--GATCGCCGAACCCT 1002 Query 302858 TGGAGCCAGCATTTACCAT 302876 |||| || ||| | ||||| Sbjct 1003 TGGACCCGGCAATCACCAT 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470545480911683