Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq66303 91.5 1e-13 seq66302 91.5 1e-13 seq64900 91.5 1e-13 seq63535 91.5 1e-13 >seq66303 Length=5292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 4818 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 4759 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||||| ||||||| | || | ||||| ||| Sbjct 4758 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 4699 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 4698 GATCTCGGCAACGTC 4684 >seq66302 Length=7949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 7475 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 7416 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||||| ||||||| | || | ||||| ||| Sbjct 7415 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 7356 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 7355 GATCTCGGCAACGTC 7341 >seq64900 Length=2396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 2141 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2200 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||||| ||||||| | || | ||||| ||| Sbjct 2201 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2260 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 2261 GATCTCGGCAACGTC 2275 >seq63535 Length=2404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 2149 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2208 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||||| ||||||| | || | ||||| ||| Sbjct 2209 CACTTCAACCCCTTCGGCAAGAAGCACGGTGGACCCGACGATGAGGAGCGTCACGTTGGC 2268 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 2269 GATCTCGGCAACGTC 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412502179569287