Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq47541 96.9 3e-15 seq64025 87.8 1e-12 seq67000 82.4 6e-11 >seq47541 Length=1677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || || ||||| || || || | ||| || || ||||| || Sbjct 1409 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 1468 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | ||||||||||| ||||||||||| ||||| || | || Sbjct 1469 TTGCCAGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTTC 1528 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||||| | || | ||||| || || || || ||||| || || ||||| || Sbjct 1529 TGCTTGACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTG 1588 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 1589 AGGGTCTTGACGAAGATCTGCAT 1611 >seq64025 Length=5555 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||||| || || || ||||| || || || | |||||| || ||||| || Sbjct 825 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGC 884 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||||||||| || || ||||| ||||| || | || Sbjct 885 TTGCCGGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 944 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || ||| | || | ||||| || || || || || || || || ||||| || Sbjct 945 TGCTTCACATTCTCGATCGTGTCCGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTC 1004 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 1005 AGCGTCTTGACGAAGATCTGCAT 1027 >seq67000 Length=10850 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | || ||| ||||| | || || ||||| || || || ||||| || | Sbjct 680 GTTG-CCACCGCGCAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 738 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | || | || || || ||||| || |||||||| | || | | ||||| |||| Sbjct 739 CGGCGAGCGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCG 798 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | ||||||||||| ||||| || | || || || || | || | ||||| | Sbjct 799 GGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACT 858 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| || | ||| || || || |||||||| Sbjct 859 CGACCTCGAGGGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384902489506719