Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq33763 105 7e-18 seq37491 100 3e-16 seq65762 98.7 1e-15 seq61750 95.1 1e-14 seq67000 93.3 4e-14 seq20806 91.5 1e-13 seq64025 87.8 2e-12 seq63834 87.8 2e-12 seq64861 86.0 6e-12 seq55626 86.0 6e-12 seq47541 82.4 7e-11 seq33364 82.4 7e-11 >seq33763 Length=823 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || || || || || |||||||| ||| Sbjct 181 GCCGCCACGAAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 240 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| ||| ||||| || |||||||| |||| || || |||||||||||||| Sbjct 241 GAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGG 300 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| ||| ||||| || | | || | ||||| ||| || || Sbjct 301 GATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGAC 360 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 137414 || | ||| | ||||||||||| | || || ||||| || ||||| || Sbjct 361 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCGC 411 >seq37491 Length=1671 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 |||||||| || || |||||||| ||| || || | ||| ||||| || || ||| Sbjct 179 GTAGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 238 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| ||||| |||||||| ||||| || ||||| ||| ||||| || Sbjct 239 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 298 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || || | || | ||||||||||||| || Sbjct 299 ACGTTCTCGATTGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGAGTC 358 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 359 TTGACGAAGATCTGCATA 376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 407 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 466 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||| ||||| ||||| || ||||| ||| ||||| || Sbjct 467 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 526 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || || | || | ||||||||||| | || Sbjct 527 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 586 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 587 TTCACGAAGATCTGCAT 603 >seq65762 Length=1559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || || || || || |||||||| ||| Sbjct 380 GCCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 439 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| ||||| || || ||||| |||| ||||| ||||| |||||||| Sbjct 440 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 499 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || || || || |||| | || | |||||| | | || || Sbjct 500 GATGCCTTCCTTATCCTGGATCTTCTGCTTTACGTTCTCGATCGTGTCCGAGCTCTCGAC 559 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||||||||| | || || ||||| || |||||| Sbjct 560 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || |||||| Sbjct 639 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 698 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||| ||||| |||||||| |||||||| ||||| || || || || Sbjct 699 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 758 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || || | || | ||||||||||||| || Sbjct 759 ACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 818 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 819 TTCACGAAGATTTGCAT 835 >seq61750 Length=9220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || || | ||| ||||| || ||||| Sbjct 3997 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCC 4056 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| ||||| |||||||| |||||||| ||||| ||| ||||| || Sbjct 4057 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTC 4116 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| ||| || || || | || | ||||||||||| | || Sbjct 4117 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 4176 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 4177 TTCACGAAGATCTGCAT 4193 >seq67000 Length=10850 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 1178 GCCGCCACGAAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 1237 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| ||| ||||| || |||||||| |||| || || |||||||||||||| Sbjct 1238 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGG 1297 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| ||| ||||| || | | || | || || ||| || || Sbjct 1298 AATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCGATGGTATCGCTGGACTCGAC 1357 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 137414 || | || | ||||||||||||| || || ||||| || ||||| || Sbjct 1358 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATCGC 1408 >seq20806 Length=178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || |||||| Sbjct 177 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCA 118 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||| |||||||||||||| |||||||| ||||| || || || || Sbjct 117 GCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 58 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 | | || | |||||| ||| || || || | || | ||||||||||| Sbjct 57 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 5 >seq64025 Length=5555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| | ||| | ||| ||||| || Sbjct 1509 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCCTCGAGCTGC 1568 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || || |||| ||||| |||||||| || || ||||| || ||||| || ||| Sbjct 1569 TTGCCCGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTT 1628 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | ||||| ||| || || || | || | |||||||||||| Sbjct 1629 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 1688 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| |||||||| Sbjct 1689 AGGGTCTTCACGAAGATTTGCAT 1711 >seq63834 Length=75625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || |||| ||| ||||| || Sbjct 69196 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 69255 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || || |||| || || |||||||| || || || ||||| ||||| || || Sbjct 69256 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTC 69315 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | ||||| ||| || || || | ||| | ||||||||||||| Sbjct 69316 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTC 69375 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 69376 AGGGTCTTGACGAAGATCTGCAT 69398 >seq64861 Length=3609 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 1335 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1394 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || || ||||| |||||||| ||||| || ||||| || || || || Sbjct 1395 GCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1454 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | ||||||||||||| || Sbjct 1455 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 1514 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 1515 TTGACGAAGATCTGCAT 1531 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | || | || || || ||||| |||||||| ||| Sbjct 1679 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGC 1738 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | ||| ||||| || ||||| || |||| || || ||||| || || || Sbjct 1739 GAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCCGGGGG 1798 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| ||| ||||| || | | || | ||||| | | || || Sbjct 1799 GATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCAGAGCTCTCGAC 1858 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 1859 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1906 >seq55626 Length=4059 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || || | ||| || || || || || Sbjct 3965 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCG 3906 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || || |||||||||||||| ||||| || ||||| || ||||| || Sbjct 3905 GCAAAGATGAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTG 3846 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || || | || | ||||||||||| | || Sbjct 3845 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 3786 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 3785 TTCACGAAGATCTGCAT 3769 >seq47541 Length=1677 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || || || |||||||| ||| || || | ||| ||||| || || ||| Sbjct 1415 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 1474 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||| || || || || || ||||| || || || || Sbjct 1475 GCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTG 1534 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | ||| | ||||||||||| | || Sbjct 1535 ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 1594 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 1595 TTGACGAAGATCTGCATA 1612 >seq33364 Length=844 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || |||| ||| ||||| || Sbjct 230 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 289 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||| ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 290 TTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTC 349 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | || || ||| || || || | || | ||||||||||| Sbjct 350 TGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 409 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 410 AGGGTCTTCACGAAGATCTGCAT 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488132041378800