Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq34646 87.8 2e-12 seq33978 82.4 8e-11 >seq34646 Length=2231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || ||||||| | || || || || || || Sbjct 2057 CCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGCCAA-AAGGGTACGGTGGGCATCAT 2115 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||| ||| ||| Sbjct 2116 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATTATCGTCA 2174 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 2175 ACCCGCACGCCATTCCCTCGCGAATGACCAT 2205 >seq33978 Length=1172 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || ||||| |||||| |||| || || |||| | || || || || || || Sbjct 92 CCCCAGATCGGCGATAAGTTCAGTTCGCGCCACGGCCAA-AAGGGTACGGTGGGCATCAT 150 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 151 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATCATCGTCA 209 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 210 ACCCGCACGCCATTCCCTCGCGAATGACCAT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521105813192120