Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq37491 105 1e-17 seq65762 102 2e-16 seq63834 102 2e-16 seq64861 100 6e-16 seq67000 93.3 8e-14 seq61750 91.5 3e-13 seq33364 84.2 4e-11 >seq37491 Length=1671 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||| ||||||||||| ||||| || || || || | Sbjct 147 TACCGCCGCGCAGACGGAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 206 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || |||| Sbjct 207 CCAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAG 266 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || ||||||||| || || || || || || || || | || Sbjct 267 GGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTC-CGAGCTCTCG 325 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| ||||| || || |||||||| Sbjct 326 ACCTCGAGGGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 375 >seq65762 Length=1559 Score = 102 bits (112), Expect = 2e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | ||| || || || || ||||| || || || || | Sbjct 381 CCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 440 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| || | || || || ||||| Sbjct 441 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 500 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || ||||||||||| || ||||| ||| ||||| || || ||||| || || | || | Sbjct 501 ATGCCTTCCTTATCCTGGATCTTCTGC-TTTACGTTCTCGATCGTGTC-CGAGCTCTCGA 558 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 559 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 607 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || || || | || | | || Sbjct 164 ACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 223 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || || || || || ||||| Sbjct 224 GTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 283 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||| ||||| ||||| || || || || || || | || || || | ||| | Sbjct 284 GTCTTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGAGTAA 342 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| ||||| || || |||||||| Sbjct 343 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 379 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 621 CGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCG 680 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || ||||| || |||||||| Sbjct 681 TCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTG 740 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||| || || || || || || || || | || || || | || | Sbjct 741 TCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTC-CGAGCTCTCGACCTCGAGGGTGA 798 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | |||||||| |||| ||||| || || || |||||| || Sbjct 799 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTGTT 839 >seq63834 Length=75625 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 69172 CCGCCGCGCAGACGAAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 69231 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| || | || ||||| || || Sbjct 69232 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 69291 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || ||||| ||||| || || || || || || | | || || Sbjct 69292 ATACCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGGACTCGAC 69350 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| ||||| || || |||||||| Sbjct 69351 CTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 69398 >seq64861 Length=3609 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | |||| Sbjct 1920 CGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCG 1979 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 1980 TCCTCAAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2039 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| |||||| || || || || || ||||| | | || || || | ||| ||| Sbjct 2040 TCTTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATC 2099 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 2100 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2134 >seq67000 Length=10850 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 684 CCACCGCGCAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 743 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| || | || || || || || Sbjct 744 AGCGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 803 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| || || || ||||| || | | || || Sbjct 804 ATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCGAC 862 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| ||||| || || |||||||| Sbjct 863 CTCGAGGGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 910 >seq61750 Length=9220 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 3751 CGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCG 3810 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 3811 TCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 3870 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||| || || || || || ||||| | | || || || | ||| ||| Sbjct 3871 TCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGAGTAATC 3930 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 3931 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 3965 >seq33364 Length=844 Score = 84.2 bits (92), Expect = 4e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || || ||||| || || || || | || | | ||||| || || || Sbjct 1 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTG 60 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||| ||||| || | || || || || || || || ||||| || || ||||| Sbjct 61 CTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 120 Query 82727 -TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 ||||| || || || ||||| || | || || || | || ||||||||||| | Sbjct 121 CTGCTTC-ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCG 179 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 | | ||||| || || |||||||| Sbjct 180 TGAGGGTCTTGACGAAGATCTGCAT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980978588648601