Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq63834 98.7 7e-16 seq64861 96.9 2e-15 seq67000 91.5 1e-13 seq33364 89.7 3e-13 seq37491 86.0 4e-12 seq33763 86.0 4e-12 seq64025 84.2 1e-11 seq63448 84.2 1e-11 seq61750 84.2 1e-11 >seq63834 Length=75625 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||| | || ||||| ||| || || |||||||| |||| Sbjct 69172 CCGCCGCGCAGACGAAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 69231 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | ||||||||||| | || Sbjct 69232 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 69291 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||||| ||| || | || | ||||||||| || || || Sbjct 69292 ATACCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGGACTCGAC 69350 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || || | || || || ||||||||||| Sbjct 69351 CTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 69398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| | || || | || Sbjct 68968 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGC 69027 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| ||| ||| Sbjct 69028 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 69087 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||| ||||| || || || || | || ||||| ||||| || Sbjct 69088 TGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTAATCGTCTTACCGGT 69146 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 69147 AAGGGTCTTGACGAAGATCTGCAT 69170 >seq64861 Length=3609 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || ||||| || Sbjct 2171 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2230 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| ||| ||||| |||| | | Sbjct 2231 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGT 2289 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | ||||| || || || || | || || | Sbjct 2290 TCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 2349 Query 33737 CAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | ||||||||||| ||||| ||||| || ||| Sbjct 2350 CGAAGATCTGCATGGTTGGCTGCTGTGTGTAGCGC 2384 >seq67000 Length=10850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| | || || ||| ||| || || |||||||| |||| | Sbjct 684 CCACCGCGCAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 743 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || || || || || || | ||||||||| || | || Sbjct 744 AGCGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 803 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || ||||| |||| | | || | |||||||| || || || Sbjct 804 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 862 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || ||||| || || || | || || || |||||||||||| Sbjct 863 CTCGAGGGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 911 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1203 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 1262 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||||| | || | ||| || ||||| ||| || Sbjct 1263 TTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTT 1322 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || || | || | ||| ||||| || || || || | ||||| || || || || Sbjct 1323 TGCTT-GACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1381 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 1382 CAGGGTCTTGACGAAGATCTGCAT 1405 >seq33364 Length=844 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 230 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 289 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | |||||||||||| | || | || || ||||| || ||| Sbjct 290 TTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTC 349 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||| ||||| || || || || | ||||| || || || || Sbjct 350 TGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 408 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || ||||||||||| |||||| Sbjct 409 GAGGGTCTTCACGAAGATCTGCATTGTTGGT 439 >seq37491 Length=1671 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | || || ||| ||| || || |||||||| |||| || ||||| | Sbjct 388 ACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 447 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || || || || || | |||||||||||| | || | || || || Sbjct 448 GTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTT 507 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || ||| || | || | |||||||| || || || || | || | Sbjct 508 GTCCTGAATCTTTTGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAA 566 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || || | || || || ||||||||||| |||||| Sbjct 567 TGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTTGGT 610 >seq33763 Length=823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 206 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 265 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||||| | || | || || ||||| ||| || Sbjct 266 TTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTT 325 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||||| || || || || | ||||| || || || || Sbjct 326 TGCTTC-ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 384 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 385 GAGGGTCTTGACGAAGATCTGCAT 408 >seq64025 Length=5555 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| |||||| || |||| || | || Sbjct 1509 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCCTCGAGCTGC 1568 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | |||||||||||| | || | || || ||||| || || Sbjct 1569 TTGCCCGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTT 1628 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||||| || || || || | || || || || || || Sbjct 1629 TGCTTC-ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 1687 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | || || || ||||| ||||| ||||| ||||| || ||| Sbjct 1688 CAGGGTCTTCACGAAGATTTGCATTGTTGGCTGCTGTGTGTAGCGC 1733 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 825 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGC 884 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| || ||| Sbjct 885 TTGCCGGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 944 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTG 33724 || ||| |||| || | ||||| | | | || || || | ||||| || || || | Sbjct 945 TGCTTC-ACATTCTCGATCGTGTC-CGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGG 1002 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | ||| || || |||||||||||| Sbjct 1003 TCAGCGTCTTGACGAAGATCTGCATA 1028 >seq63448 Length=5210 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| || || |||| || | || Sbjct 3726 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGC 3667 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| || | || | || || ||||| || ||| Sbjct 3666 TTACCCGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 3607 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | |||||||| || || || || | ||||| || || || || Sbjct 3606 TGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCTACCTCGAGGGTGATGGTCTTGCCGGT 3548 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | || || || ||||||||||| ||||| ||||| || ||| Sbjct 3547 GAGGGTCTTCACGAAGATCTGCATTGTTGGCTGCTGTGTGTAGCGC 3502 >seq61750 Length=9220 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 3991 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 4050 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| || | || | ||||| ||||| ||| || Sbjct 4051 TTACCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTT 4110 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | ||||| || || || || Sbjct 4111 TGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGT 4169 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753 | || || || ||||||||||| ||| Sbjct 4170 GAGGGTCTTCACGAAGATCTGCATTGTT 4197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328433753849280