Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq63834 91.5 1e-13 seq33763 87.8 2e-12 seq67000 86.0 6e-12 >seq63834 Length=75625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || |||| ||||| ||| Sbjct 69171 CATGCAGATCTTCGTCAAGACCCTTACCGGTAAGACGATTACCCTCGAGGTCGAGTCCAG 69112 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| |||||| | || || || || ||| || || ||||| || || |||||||| Sbjct 69111 CGATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 69052 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 ||| | ||||| | || |||||| || ||||| |||| Sbjct 69051 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATG 69014 >seq33763 Length=823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| || | ||||| |||| ||||| ||| | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGC 349 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 348 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 289 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || || || || ||||| || | | | || ||| ||||| Sbjct 288 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 229 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || || |||||| |||| Sbjct 228 ATCCAGAAGGAGTCCACCCTTCA 206 >seq67000 Length=10850 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| || | ||||| |||| ||||| ||| | Sbjct 1405 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1346 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || ||||| ||| || || |||||||| || ||||||||| Sbjct 1345 GATACCATCGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1286 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 25329 || | ||||| | || || || || ||||| || Sbjct 1285 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 1251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444719079710880