Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq50985 127 3e-24 seq50789 127 3e-24 seq50610 127 3e-24 seq50609 127 3e-24 >seq50985 Length=2480 Score = 127 bits (140), Expect = 3e-24 Identities = 368/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 800 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 741 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 740 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 682 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 681 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCT 622 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 621 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 562 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 561 CGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 502 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 501 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 442 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | |||||||| || | | || | ||| || ||| || || || |||| Sbjct 441 GCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 382 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-TTC 40087 | || || || |||| || || || || || | | || || | ||| | | | | Sbjct 381 CCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCC 323 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 322 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 263 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 262 TTCTTGTACATCTCCCAGAT 243 >seq50789 Length=2477 Score = 127 bits (140), Expect = 3e-24 Identities = 368/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 1678 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1737 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 1738 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1796 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 1797 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCT 1856 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 1857 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1916 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 1917 CGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1976 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 1977 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 2036 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | |||||||| || | | || | ||| || ||| || || || |||| Sbjct 2037 GCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 2096 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-TTC 40087 | || || || |||| || || || || || | | || || | ||| | | | | Sbjct 2097 CCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCC 2155 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 2156 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2215 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 2216 TTCTTGTACATCTCCCAGAT 2235 >seq50610 Length=4059 Score = 127 bits (140), Expect = 3e-24 Identities = 368/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 3709 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 3650 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 3649 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 3591 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 3590 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCT 3531 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 3530 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 3471 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 3470 CGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 3411 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 3410 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 3351 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | |||||||| || | | || | ||| || ||| || || || |||| Sbjct 3350 GCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 3291 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-TTC 40087 | || || || |||| || || || || || | | || || | ||| | | | | Sbjct 3290 CCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCC 3232 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 3231 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3172 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 3171 TTCTTGTACATCTCCCAGAT 3152 >seq50609 Length=4102 Score = 127 bits (140), Expect = 3e-24 Identities = 368/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 3752 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 3693 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 3692 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 3634 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 3633 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCT 3574 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 3573 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 3514 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 3513 CGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 3454 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 3453 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 3394 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | |||||||| || | | || | ||| || ||| || || || |||| Sbjct 3393 GCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 3334 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-TTC 40087 | || || || |||| || || || || || | | || || | ||| | | | | Sbjct 3333 CCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCC 3275 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 3274 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3215 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 3214 TTCTTGTACATCTCCCAGAT 3195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686329572740760