Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq50985 131 5e-25 seq50789 131 5e-25 seq50610 131 5e-25 seq50609 131 5e-25 seq58068 93.3 1e-13 seq54405 93.3 1e-13 seq54404 93.3 1e-13 >seq50985 Length=2480 Score = 131 bits (144), Expect = 5e-25 Identities = 318/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||| ||||| | |||||||| Sbjct 351 TTCATCAAGCACGTCCTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 410 Query 443475 GTGACGCGTTTCTACGAAATGGTAGTGTACA-----CCGAGGCCCGCTACTTCTACGCGT 443529 | || ||| | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 411 GCCGGCCGCTTC-ATGAA---GGAG-GTACAGGTGCCCGAGGCGCGCTGCTTCTACGGCT 465 Query 443530 TCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAA 443589 | ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| Sbjct 466 TTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTAC 524 Query 443590 TTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 || | ||| | ||| || | ||||| | || |||| ||| || Sbjct 525 GTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 584 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAA-TCTC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 585 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGTGTCGAGACCTTCGC 643 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || |||| || || | ||||| || | || || ||||||||| || | Sbjct 644 CGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 702 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 703 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 762 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || || ||||| | || |||||||||||||| || |||||||||| Sbjct 763 TCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 813 >seq50789 Length=2477 Score = 131 bits (144), Expect = 5e-25 Identities = 318/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||| ||||| | |||||||| Sbjct 2127 TTCATCAAGCACGTCCTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 2068 Query 443475 GTGACGCGTTTCTACGAAATGGTAGTGTACA-----CCGAGGCCCGCTACTTCTACGCGT 443529 | || ||| | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 2067 GCCGGCCGCTTC-ATGAA---GGAG-GTACAGGTGCCCGAGGCGCGCTGCTTCTACGGCT 2013 Query 443530 TCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAA 443589 | ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| Sbjct 2012 TTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTAC 1954 Query 443590 TTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 || | ||| | ||| || | ||||| | || |||| ||| || Sbjct 1953 GTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 1894 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAA-TCTC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 1893 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGTGTCGAGACCTTCGC 1835 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || |||| || || | ||||| || | || || ||||||||| || | Sbjct 1834 CGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 1776 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 1775 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 1716 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || || ||||| | || |||||||||||||| || |||||||||| Sbjct 1715 TCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1665 >seq50610 Length=4059 Score = 131 bits (144), Expect = 5e-25 Identities = 318/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||| ||||| | |||||||| Sbjct 3260 TTCATCAAGCACGTCCTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 3319 Query 443475 GTGACGCGTTTCTACGAAATGGTAGTGTACA-----CCGAGGCCCGCTACTTCTACGCGT 443529 | || ||| | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 3320 GCCGGCCGCTTC-ATGAA---GGAG-GTACAGGTGCCCGAGGCGCGCTGCTTCTACGGCT 3374 Query 443530 TCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAA 443589 | ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| Sbjct 3375 TTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTAC 3433 Query 443590 TTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 || | ||| | ||| || | ||||| | || |||| ||| || Sbjct 3434 GTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 3493 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAA-TCTC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 3494 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGTGTCGAGACCTTCGC 3552 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || |||| || || | ||||| || | || || ||||||||| || | Sbjct 3553 CGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 3611 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 3612 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 3671 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || || ||||| | || |||||||||||||| || |||||||||| Sbjct 3672 TCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 3722 >seq50609 Length=4102 Score = 131 bits (144), Expect = 5e-25 Identities = 318/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||| ||||| | |||||||| Sbjct 3303 TTCATCAAGCACGTCCTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 3362 Query 443475 GTGACGCGTTTCTACGAAATGGTAGTGTACA-----CCGAGGCCCGCTACTTCTACGCGT 443529 | || ||| | ||| | || ||||| ||||||| |||| |||||||| | Sbjct 3363 GCCGGCCGCTTC-ATGAA---GGAG-GTACAGGTGCCCGAGGCGCGCTGCTTCTACGGCT 3417 Query 443530 TCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAA 443589 | ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| Sbjct 3418 TTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTAC 3476 Query 443590 TTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 || | ||| | ||| || | ||||| | || |||| ||| || Sbjct 3477 GTCAAGGACGCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 3536 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAA-TCTC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 3537 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGTGTCGAGACCTTCGC 3595 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || |||| || || | ||||| || | || || ||||||||| || | Sbjct 3596 CGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 3654 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 3655 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 3714 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || || ||||| | || |||||||||||||| || |||||||||| Sbjct 3715 TCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 3765 >seq58068 Length=5899 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 3653 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 3594 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 3593 GCCGCCAACGCGATCCAGTTCACCGT 3568 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 4054 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 3995 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 3994 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 3935 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 3934 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 3903 >seq54405 Length=5848 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 5615 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 5674 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 5675 GCCGCCAACGCGATCCAGTTCACCGT 5700 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 5214 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 5273 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 5274 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 5333 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 5334 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 5365 >seq54404 Length=5758 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 5525 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 5584 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 5585 GCCGCCAACGCGATCCAGTTCACCGT 5610 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 5124 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 5183 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 5184 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 5243 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 5244 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 5275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586963171910255