Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq47541 111 5e-19 seq33364 111 5e-19 seq37491 109 2e-18 seq47019 105 2e-17 seq64025 102 2e-16 seq65762 98.7 3e-15 seq63834 98.7 3e-15 seq63528 93.3 1e-13 seq63448 91.5 4e-13 seq50375 87.8 5e-12 seq50374 87.8 5e-12 seq49966 87.8 5e-12 seq48571 87.8 5e-12 >seq47541 Length=1677 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || ||||||||||| || || || || || || Sbjct 1381 CATGCCACCACGGAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 1440 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| ||||| ||||| |||||||| || Sbjct 1441 GGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGG 1500 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || |||| || || | || Sbjct 1501 GGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCGGACGACTC 1560 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 1561 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1611 >seq33364 Length=844 Score = 111 bits (122), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || |||||||| ||||| || || || || || || Sbjct 202 CATACCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC 261 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| ||||| ||||| ||||||||||| Sbjct 262 GGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGG 321 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || ||||| || || || || || || || | ||| | ||| | Sbjct 322 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATC-GCTGGACT 380 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 381 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 433 >seq37491 Length=1671 Score = 109 bits (120), Expect = 2e-18 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || || || || || || Sbjct 373 CATACCGCCACGAAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 432 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| ||||| ||||||||||| Sbjct 433 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGG 492 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 ||| || || || || |||||||| ||| || || || || || |||| || | ||| Sbjct 493 AGGGATGCCCTCCTTGTCCTGAATCTTTTGC-TTCACGTTCTCGATCGTGTC-GCTGGAC 550 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || |||||||| Sbjct 551 TCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 603 >seq47019 Length=2080 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || || || ||||| || || || || || |||| Sbjct 529 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 588 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||| ||||| || || |||||||||||||| Sbjct 589 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGGAGGG 648 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || |||||||| || || || || || || |||| || || || || Sbjct 649 ATGCCCTCCTTATCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACC 708 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || |||| ||||| ||||| || || || || || || |||||| Sbjct 709 TCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATT 756 >seq64025 Length=5555 Score = 102 bits (112), Expect = 2e-16 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || ||||| || ||||| || || || || || || Sbjct 1481 CATACCGCCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 1540 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||| || || || || || || || || || ||||| ||||| ||||||||||| Sbjct 1541 GGCGAGTGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGG 1600 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 || || || || || ||||| || ||| || || || || || || | || | ||| Sbjct 1601 GGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTGTC-GCTGGAC 1658 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || |||| ||||| ||||| || || || || || || |||||| Sbjct 1659 TCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1712 >seq65762 Length=1559 Score = 98.7 bits (108), Expect = 3e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 605 CATACCACCACGGAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 664 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 665 GGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGG 724 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || ||||| || || || || || || || | || || || Sbjct 725 AGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGCTCTC 784 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| ||||| || || || || || || |||||| Sbjct 785 GACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 836 >seq63834 Length=75625 Score = 98.7 bits (108), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| ||||| || || || || || || | | || || || || Sbjct 69187 AGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 69246 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||||||||| ||||| ||||| || ||| Sbjct 69247 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 69306 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || || | || | ||| || || || || |||| || Sbjct 69307 TGGATCTTCTGCTTCACGTTCTCGATGGTGTC-GCTGGACTCGACCTCGAGAGTAATCGT 69365 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 69366 CTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 69398 >seq63528 Length=6792 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 3039 CATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 2980 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 2979 GGCCAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 2920 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || |||| || | || Sbjct 2919 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTC 2860 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || || || ||||| Sbjct 2859 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2809 >seq63448 Length=5210 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || |||||||| ||||| || || || || || || Sbjct 3982 CATGCCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC 3923 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 3922 GGCGAGGGTGCGACCGTCCTCGAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGATCAGG 3863 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || || || || || ||||| || || || || || || || | ||| | ||| | Sbjct 3862 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATC-GCTGGACT 3804 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || || || |||||||| Sbjct 3803 CGACCTCGAGAGTAATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 3752 >seq50375 Length=2484 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 1755 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 1814 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 1815 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 1845 >seq50374 Length=2172 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 1443 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 1502 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 1503 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 1533 >seq49966 Length=2090 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2054 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 1995 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 1994 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 1964 >seq48571 Length=2120 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 37 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 96 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 97 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513944737684577