Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq61102 87.8 2e-12 seq60283 87.8 2e-12 seq59454 87.8 2e-12 >seq61102 Length=3314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 984 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 1043 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 1044 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 1103 Query 104267 CCT 104269 || Sbjct 1104 GCT 1106 >seq60283 Length=4224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 3241 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 3182 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 3181 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 3122 Query 104267 CCT 104269 || Sbjct 3121 GCT 3119 >seq59454 Length=9412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104147 CTACCAGGGGGCCACCGTGCTGGCGCCCAAGACCTCCTTCTACAACACGCCCGTCGCCGT 104206 |||| |||| |||| |||| | || |||||||| ||| |||| || |||| ||||| Sbjct 7575 CTACAAGGGCGCCATCGTGATTGCCCCCAAGACGGCCTACTACGACGTGCCCATCGCCAC 7634 Query 104207 GCTGGACTTCGCCAGCCTCTACCCCAGCATCATCCAGGCCTACAACCTCTGCTACTCCAC 104266 || || |||||| || |||||| |||||| ||| ||||||||||||||||||| Sbjct 7635 CCTCGATTTCGCCTCGCTGTACCCCTCCATCATGATTGCCCACAACCTCTGCTACTCCAC 7694 Query 104267 CCT 104269 || Sbjct 7695 GCT 7697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658183726403840