Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq61737 116 2e-21 seq55626 114 9e-21 seq33763 113 3e-20 seq64025 104 2e-17 seq47541 104 2e-17 seq33364 98.7 7e-16 seq64861 95.1 8e-15 seq63834 95.1 8e-15 seq63448 95.1 8e-15 seq38151 95.1 8e-15 seq21179 91.5 1e-13 >seq61737 Length=2782 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || | || Sbjct 2103 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGAGCTCG 2162 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | ||||| || || Sbjct 2163 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 2222 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 2223 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2282 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2283 ATCCAGAAGGAGTCCAC 2299 >seq55626 Length=4059 Score = 114 bits (126), Expect = 9e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || || ||||| ||||| || || |||| Sbjct 3768 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 3827 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || ||||| || ||||| || || | || || ||||| Sbjct 3828 CGACACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 3887 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| || || | | ||| ||||| Sbjct 3888 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTACAA 3947 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3948 CATCCAGAAGGAGTCCAC 3965 >seq33763 Length=823 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| || || |||| Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGC 349 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||| ||||| || || | || || ||||| Sbjct 348 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 289 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 288 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 229 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 228 ATCCAGAAGGAGTCCAC 212 Score = 95.1 bits (104), Expect = 8e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 180 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTCGAGTCGTCC 121 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || || || ||||| || ||| | || || ||||| Sbjct 120 GACACGATCGAGAACGTAAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCAG 61 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| || || | | ||| |||||| Sbjct 60 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 1 >seq64025 Length=5555 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || | || Sbjct 1255 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTCGAGAGCTCG 1196 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || || || Sbjct 1195 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 1136 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| |||||| | | || |||||| Sbjct 1135 CAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGCACTCTGGCTGACTACAAC 1076 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1075 ATCCAGAAGGAGTCCAC 1059 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 1483 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCC 1424 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 1423 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1364 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| |||||| | | || |||||| Sbjct 1363 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCTGACTACAAC 1304 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1303 ATCCAGAAGGAGTCCAC 1287 >seq47541 Length=1677 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| || || || | Sbjct 1611 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 1552 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || ||||| Sbjct 1551 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAG 1492 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| || || | | ||| |||||| Sbjct 1491 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 1432 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1431 ATCCAGAAGGAGTCTAC 1415 >seq33364 Length=844 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 204 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 145 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || || || Sbjct 144 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 85 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 84 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 25 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 24 ATCCAGAAGGAGTCGAC 8 >seq64861 Length=3609 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || | || Sbjct 1531 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1472 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 1471 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1412 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | | ||| |||||| Sbjct 1411 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1352 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1351 ATCCAGAAGGAGTCCAC 1335 >seq63834 Length=75625 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 68942 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCC 68883 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || || || Sbjct 68882 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 68823 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | || |||||| Sbjct 68822 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 68763 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 68762 ATCCAGAAGGAGTCCAC 68746 >seq63448 Length=5210 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || |||||||| || || |||| Sbjct 3752 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATTACTCTCGAGGTCGAGTCCAGC 3811 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || || ||||| || || | || || ||||| Sbjct 3812 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 3871 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 3872 CAGCGCCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 3931 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3932 ATCCAGAAGGAGTCGAC 3948 >seq38151 Length=7651 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || | | Sbjct 83 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGAGCTCC 142 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 143 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 202 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 203 CAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 262 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 263 ATCCAGAAGGAGTCTAC 279 >seq21179 Length=175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| ||||| || ||||||||||| || |||||||| ||||| || || || | || Sbjct 1 GCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 60 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | | || || || ||| ||||| || || | || || ||||| || Sbjct 61 CACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAGCA 120 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 ||| | || ||||||||||| || || || |||| Sbjct 121 GCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337731703189172