Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq57661 138 1e-27 seq42187 138 1e-27 seq37095 138 1e-27 seq65323 87.8 2e-12 >seq57661 Length=1717 Score = 138 bits (152), Expect = 1e-27 Identities = 372/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | |||||| | |||||| || | Sbjct 1133 AGGCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCG 1192 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||||||||| || || ||||| | |||||| || | | ||| || || ||| Sbjct 1193 AGGCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTGCCGGAGAAG 1252 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG--------- 17131 || || |||||||||| || || |||| | || |||||| | ||| || Sbjct 1253 AAGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCC 1312 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 || ||||| ||||| ||| |||| |||||||| | ||| | | || || Sbjct 1313 TCCTTGTTG---ATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTC 1369 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || | || || || |||| | | || || |||||||| Sbjct 1370 TCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGG 1429 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||| |||||||| |||||||| ||||| || || || ||||| ||||| || Sbjct 1430 AGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGC 1489 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | || || |||| ||| || | || || || ||| |||||||||| Sbjct 1490 GCCTCGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCG 1549 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAG 17430 ||||| || ||||| || |||| | ||||| ||||| | | |||| || || | || Sbjct 1550 TCGCTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGCTGAG 1608 Query 17431 AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 ||||| ||| | || | | ||| |||||||||| ||||| || || Sbjct 1609 CGATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGC 1668 Query 17491 CACTGCCTTTTTATACATATTCCAAAT 17517 | | ||||| || ||||| | ||| || Sbjct 1669 CTCGGCCTTCTTGTACATCTCCCAGAT 1695 >seq42187 Length=1775 Score = 138 bits (152), Expect = 1e-27 Identities = 372/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | |||||| | |||||| || | Sbjct 585 AGGCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCG 526 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||||||||| || || ||||| | |||||| || | | ||| || || ||| Sbjct 525 AGGCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTGCCGGAGAAG 466 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG--------- 17131 || || |||||||||| || || |||| | || |||||| | ||| || Sbjct 465 AAGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCC 406 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 || ||||| ||||| ||| |||| |||||||| | ||| | | || || Sbjct 405 TCCTTGTTG---ATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTC 349 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || | || || || |||| | | || || |||||||| Sbjct 348 TCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGG 289 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||| |||||||| |||||||| ||||| || || || ||||| ||||| || Sbjct 288 AGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGC 229 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | || || |||| ||| || | || || || ||| |||||||||| Sbjct 228 GCCTCGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCG 169 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAG 17430 ||||| || ||||| || |||| | ||||| ||||| | | |||| || || | || Sbjct 168 TCGCTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGCTGAG 110 Query 17431 AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 ||||| ||| | || | | ||| |||||||||| ||||| || || Sbjct 109 CGATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGC 50 Query 17491 CACTGCCTTTTTATACATATTCCAAAT 17517 | | ||||| || ||||| | ||| || Sbjct 49 CTCGGCCTTCTTGTACATCTCCCAGAT 23 >seq37095 Length=1954 Score = 138 bits (152), Expect = 1e-27 Identities = 372/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | |||||| | |||||| || | Sbjct 1690 AGGCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCG 1631 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||||||||| || || ||||| | |||||| || | | ||| || || ||| Sbjct 1630 AGGCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTGCCGGAGAAG 1571 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG--------- 17131 || || |||||||||| || || |||| | || |||||| | ||| || Sbjct 1570 AAGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCC 1511 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 || ||||| ||||| ||| |||| |||||||| | ||| | | || || Sbjct 1510 TCCTTGTTG---ATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTC 1454 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || | || || || |||| | | || || |||||||| Sbjct 1453 TCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGG 1394 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||| |||||||| |||||||| ||||| || || || ||||| ||||| || Sbjct 1393 AGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGC 1334 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | || || |||| ||| || | || || || ||| |||||||||| Sbjct 1333 GCCTCGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCG 1274 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAG 17430 ||||| || ||||| || |||| | ||||| ||||| | | |||| || || | || Sbjct 1273 TCGCTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGCTGAG 1215 Query 17431 AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 ||||| ||| | || | | ||| |||||||||| ||||| || || Sbjct 1214 CGATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGC 1155 Query 17491 CACTGCCTTTTTATACATATTCCAAAT 17517 | | ||||| || ||||| | ||| || Sbjct 1154 CTCGGCCTTCTTGTACATCTCCCAGAT 1128 >seq65323 Length=85180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| |||||||| ||||| || || || ||||| || || | ||||| | | ||| Sbjct 60905 GAGTGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAACACCTCGCTTCGGGCACTTGC 60964 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 || || ||| || |||| || || || ||||||||||||||| ||||| || Sbjct 60965 ACCTCTTTCATGAAGCGACCCGCCAGGTTCTCTGCCACGATGCCGTCGCTAGCGGCAAAG 61024 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTT 17446 || |||| | ||||| ||||| | |||||| | || ||| |||||| ||| Sbjct 61025 AATGCCAGAACGTGCTTGATGAAGTGCCGTTCGTCGGCCGTGAGAGATTGCCAGTGCTTC 61084 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 | || | | ||| || || |||| |||||| || ||| | ||||| || ||| Sbjct 61085 ATGTCATCACCGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 61144 Query 17507 ATATTCCAAAT 17517 || | ||| || Sbjct 61145 ATCTCCCAGAT 61155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517110648208440