Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq65323 84.2 3e-11 >seq65323 Length=85180 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 |||| |||||||| || ||||| ||||| || ||||||||||| || || |||| | | Sbjct 60903 CCGAGTGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAACACCTCGCTTCGGGCACTT 60962 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | || ||| | || || | || | || || ||| || ||||| || || |||| Sbjct 60963 GCACCTCTTTCATGAAGCGACCCGCCAGGTTCTCTGCCACGATGCCGTCGCTAGCGGCAA 61022 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 | || |||| || || || || || | |||||| | || || | ||| | | Sbjct 61023 AGAATGCCAGAACGTGCTTGATGAAGTGCCGTTCGTCGGCCGTGAGAGATTGCCAGTGCT 61082 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 | || || | | | ||| || || || | ||||| || || ||||| ||||| || | Sbjct 61083 TCATGTCATCACCGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGT 61142 Query 24673 ACATATTCCAGATG 24686 |||| | ||||||| Sbjct 61143 ACATCTCCCAGATG 61156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593222628945840