Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq34497 100 3e-16 seq65431 82.4 9e-11 seq59669 82.4 9e-11 >seq34497 Length=166879 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 ||||| || || || || | ||| || ||||||| ||||| |||| || || ||| Sbjct 40413 TGCGCATCGCCAAGCGAATGCACGAAATCGCCGGGCTTCAGGCCGGTGACCTGCGCCACC 40354 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 || |||||||| | ||| || |||||||| ||||| || || | ||| | Sbjct 40353 ATCATTGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGGAAGACATCCGCT 40294 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGG 145890 || |||||||| ||||||||||| |||| || || || || ||||| ||| | Sbjct 40293 GAACGCTGGTAGAGCTGGCAGGACAGCTTGCCCTTGGCGACATAAAACTGAAACAAGCAA 40234 Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCG 145938 |||||||||||||| ||||| | | || ||||| ||||||||| Sbjct 40233 TGGCAGGGCGGCAGCGCCATCTTGTCGACTTCGGCCGGATTCCAGGCG 40186 >seq65431 Length=7072 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| ||||||| | |||||||||||||||| || |||||||| || || ||||| || Sbjct 3232 GTGAGCGACCAAGCAGGTCAGCAGGGAGTACGACGCAATGTTGAATGGTACGCCCAGTCC 3291 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGG 145848 |||||| | |||||||| |||| |||| Sbjct 3292 CATGTCAGCAGAGCGCTGATACATCTGG 3319 >seq59669 Length=4937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| ||||||| | |||||||||||||||| || |||||||| || || ||||| || Sbjct 3841 GTGAGCGACCAAGCAGGTCAGCAGGGAGTACGACGCAATGTTGAATGGTACGCCCAGTCC 3782 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGG 145848 |||||| | |||||||| |||| |||| Sbjct 3781 CATGTCAGCAGAGCGCTGATACATCTGG 3754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589580892081320