Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq58101 105 1e-17 seq49189 105 1e-17 seq38874 105 1e-17 seq65323 96.9 7e-15 >seq58101 Length=8023 Score = 105 bits (116), Expect = 1e-17 Identities = 309/469 (66%), Gaps = 13/469 (3%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 5695 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 5636 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 5635 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 5576 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | |||| | |||||| ||||| || | |||||| ||| |||| ||| Sbjct 5575 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 5516 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| | || || | || || || ||||| | || Sbjct 5515 CCCAACGAAGCCCCCGGCCTGTTTGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 5458 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 5457 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 5398 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 5397 CCA---TCCTCGAGTCTCAGATCGAGACTGGCACGCCCTACATGCTGTACAAGGACGCCT 5341 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 5340 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 5281 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 5280 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 5232 >seq49189 Length=7476 Score = 105 bits (116), Expect = 1e-17 Identities = 309/469 (66%), Gaps = 13/469 (3%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 6373 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 6314 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 6313 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 6254 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | |||| | |||||| ||||| || | |||||| ||| |||| ||| Sbjct 6253 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 6194 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| | || || | || || || ||||| | || Sbjct 6193 CCCAACGAAGCCCCCGGCCTGTTTGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 6136 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 6135 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 6076 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 6075 CCA---TCCTCGAGTCTCAGATCGAGACTGGCACGCCCTACATGCTGTACAAGGACGCCT 6019 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 6018 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 5959 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 5958 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 5910 >seq38874 Length=7777 Score = 105 bits (116), Expect = 1e-17 Identities = 309/469 (66%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 2083 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 2142 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 2143 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 2202 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | |||| | |||||| ||||| || | |||||| ||| |||| ||| Sbjct 2203 TGGATTCCCGATCTCTTCATGAAGCGCGTGGAGATGGGCGGCGACTGGTCGCTCTTTTGC 2262 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| | || || | || || || ||||| | || Sbjct 2263 CCCAACGAAGCCCCCGGCCTGTTTGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 2320 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 2321 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 2380 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 2381 CCA---TCCTCGAGTCTCAGATCGAGACTGGCACGCCCTACATGCTGTACAAGGACGCCT 2437 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 2438 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 2497 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 2498 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 2546 >seq65323 Length=85180 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 |||||||| | ||||| || || |||| ||||| | || || || |||||||| Sbjct 56252 CGAAAGGGAGCCTTCGCGATCTACCTGGAGCCCTGGCATTCGGACATCTTCGAGTTCCTC 56311 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || | ||||||||| ||||||| ||| | | || || |||||||||||||||||| Sbjct 56312 GATCTCAAAAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTG 56371 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||| | |||| | |||||| |||||| |||| | ||| | ||| |||| Sbjct 56372 TGGATTCCCGATCTCTTCATGAAGCGCGTCGAGGCTGGTGGCTACTGGTCGCT 56424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072841433127744