Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq41976 188 3e-43 seq34564 102 3e-17 >seq41976 Length=13014 Score = 188 bits (208), Expect = 3e-43 Identities = 186/238 (78%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 |||||||||||| ||| | |||||| || ||||||| || |||||| |||||||||| Sbjct 2453 CATGCCGAGCGCCTGC-ATGTAGGTTTCCAGGATGGTTTCCTGCTCCTGGCGCTCGTCGG 2395 Query 44128 TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCT 44187 |||||||||||||| ||| | | ||||| | |||| | ||||||||| | |||| Sbjct 2394 CGTCCTGCTTGCGCATACGGATGATGGTGCGCAGCACCTTGACGTCGAAGCCGTTGCCCT 2335 Query 44188 TTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGC 44247 | || ||||| || || ||||||||||||||| ||| |||||||| |||||||| | || Sbjct 2334 TGGCTTCGCCATAGACGTCCTTGATGTCGTCGCTGATCGTCTTCTTCTCTTCCTCGAGGC 2275 Query 44248 GTTCGATGCGGTGGATGAAGGCCTTGAGCTGATCGCGCGCAACGCTGTGCACGCTTTC 44305 | ||||| || | ||||| |||||||||||| | ||||| |||||| || |||| Sbjct 2274 GCTCGATACGCTCGATGATGGCCTTGAGCTGCCCCTTCGCAAAGCTGTGAGCGGTTTC 2217 >seq34564 Length=203146 Score = 102 bits (112), Expect = 3e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48660 GACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGGAG 48719 |||| | | |||||| |||| | || | ||||| | ||| | |||||||| ||||| Sbjct 44167 GACAAGTATGTCGGCAGCCGCGTGCGCATGCGCCGGATCATGCTTGGCATGAGTCAGGAA 44108 Query 48720 ACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCC 48779 | || | | | || ||| |||| || |||||||||||||||||||| |||||| || Sbjct 44107 AAACTTGGCGAGGCGCTTGGCCTCACATTTCAGCAGGTCCAGAAATACGAGAAGGGCACC 44048 Query 48780 AACCGCGTCGGCGCCAGCAGGCTGCA 48805 |||||| ||||||| ||| | ||||| Sbjct 44047 AACCGCATCGGCGCAAGCCGCCTGCA 44022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183463007587188