Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq34497 109 5e-19 >seq34497 Length=166879 Score = 109 bits (120), Expect = 5e-19 Identities = 210/310 (68%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 ||||||| ||| |||||||||| || | | || || ||| || | || | | Sbjct 40488 ATCTTCATGGTCGGCAACGGACGCGTGGGTCGCGTGAGTTGCAGCCGCGCCTGGTCGAGG 40429 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| |||| || || || || | | ||||| || || || || ||||||| Sbjct 40428 TGGTTTGAATAAAGATGCGCATCGCCAAGCGAATGCACGAAATCGCCGGGCTTCAGGCCG 40369 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 ||||| || || | || ||||| || || ||| |||||||| ||||| || ||| Sbjct 40368 GTGACCTGCGCCACCATCATTGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCG 40309 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 ||| | || || || | |||||| |||||||||||||||| ||| || || ||| Sbjct 40308 AGGAAGACATCCGCTGAACGCTGGTAGAGCTGGCAGGACAGCTTGCCCTTGGCGACATAA 40249 Query 21117 AACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCAC 21176 |||||| |||| || || || || || |||||| ||| || || || ||||| Sbjct 40248 AACTGAAACAAGCAATGGCAGGGCGGCAGCGCCATCTTGTCGACTTCGGCCGGATTCCAG 40189 Query 21177 GCGCACATAA 21186 |||| || || Sbjct 40188 GCGCTCACAA 40179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427425479409840