Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq43096 89.7 8e-13 seq43095 89.7 8e-13 >seq43096 Length=3664 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 396 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 337 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| |||||| || | ||| ||| | Sbjct 336 GCGAGGCGAAATCGAGGGTAGCGATGGGCACGTCATAGTAGGCCGTCTTGGGGGCGATCA 277 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 276 CGATGGCGCCCTTGTAG 260 >seq43095 Length=3651 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 396 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 337 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| |||||| || | ||| ||| | Sbjct 336 GCGAGGCGAAATCGAGGGTAGCGATGGGCACGTCATAGTAGGCCGTCTTGGGGGCGATCA 277 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 276 CGATGGCGCCCTTGTAG 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770702147481960