Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq65323 96.9 5e-15 >seq65323 Length=85180 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||| ||||||||| || || | | || || ||||| ||| | || |||| Sbjct 56478 TCGAACTTGTCTCCCCAGACGTCCTGAAGACCCGGCGCTTCGTTGGGATCGAACAGCGAC 56419 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 || | ||| || ||| || || ||||| |||||||| |||||||| || || || || Sbjct 56418 CAGTAGCCACCAGCCTCGACGCGCTTCATGAAGAGATCGGGAATCCACAG-GCCGTAGAA 56360 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || | | | | |||||| || || |||||||| |||||||||||| | | Sbjct 56359 GAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGATCGAGGAACTCGAA 56300 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || || |||||||| || |||| ||| || || | ||||| ||| ||| Sbjct 56299 GATGTCCGAATGCCAGGGCTCCAGGTAGATCGCGAAGGCTCCCTTTCGCTTG 56248 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 |||| |||||||| || ||||| || || || ||||||||||| || || |||| | | Sbjct 60903 CCGAGTGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAACACCTCGCTTCGGGCACTT 60962 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 |||| ||| | || || | || | || || ||| || ||||| || || |||| Sbjct 60963 GCACCTCTTTCATGAAGCGACCCGCCAGGTTCTCTGCCACGATGCCGTCGCTAGCGGCAA 61022 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || |||| || || || || || || ||||| || || || | ||| | | Sbjct 61023 AGAATGCCAGAACGTGCTTGATGAAGTGCCGTTCGTCGGCCGTGAGAGATTGCCAGTGCT 61082 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 | || || | | | ||| || || || | ||||| || || ||||| ||||| || | Sbjct 61083 TCATGTCATCACCGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGT 61142 Query 50498 ACATATTCCAGATG 50511 |||| | ||||||| Sbjct 61143 ACATCTCCCAGATG 61156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717665157922120