Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq65323 102 8e-17 seq57533 96.9 4e-15 seq64782 95.1 1e-14 seq63570 95.1 1e-14 seq65788 89.7 5e-13 seq37153 89.7 5e-13 seq65093 86.0 6e-12 seq35527 86.0 6e-12 >seq65323 Length=85180 Score = 102 bits (112), Expect = 8e-17 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||| Sbjct 60460 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGC 60401 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG-TTGTTGCA 50750 |||||||| | | | |||||| ||||||| |||||||| || ||| | || | || ||| Sbjct 60400 ATGAACGCGGGCCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTGCTCGTGGCA 60341 Query 50751 -GCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTTATGAATAACATA 50808 | || | || ||| |||| || | |||| |||||||| || | ||| | || Sbjct 60340 CTCGGGTGCGAC--AAACACTACAACGCCACG-AACCCCTTCCCCTGGATGGAGCTGATC 60284 Query 50809 TCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 || | |||||||| || ||||| ||||| | || || ||||| ||| Sbjct 60283 TCACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGAGTCGGCGAGTAC 60236 >seq57533 Length=4825 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 2859 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2918 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 2919 GCGAAGATGAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 2978 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || ||||| | || | ||||||||||| | || Sbjct 2979 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 3038 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 3039 TTGACGAAGATCTGCATA 3056 >seq64782 Length=5112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 2760 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2701 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||||||||| || ||||| || ||||| || || || || Sbjct 2700 GCAAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 2641 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||||| || Sbjct 2640 ACGTTCTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 2581 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 2580 TTCACGAAGATCTGCAT 2564 >seq63570 Length=11955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 7368 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 7309 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| |||||||| ||||| || || || || Sbjct 7308 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 7249 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | ||||||||||||| || Sbjct 7248 ACGTTCTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 7189 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 7188 TTGACGAAGATCTGCAT 7172 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 ||| || || |||||||||||||| |||||||| ||||| || || || || | | Sbjct 7039 GATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTT 6980 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 || | |||||| | || ||| || || | || | |||||||||||||| || || || Sbjct 6979 CTCGATCGTGTCGGAGGATTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTGAC 6920 Query 143173 GAATATTTGCATA 143185 ||| || |||||| Sbjct 6919 GAAGATCTGCATA 6907 >seq65788 Length=3562 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || |||||| Sbjct 378 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCA 319 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||| || || || ||||| || ||||| || || || || Sbjct 318 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 259 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||||||||| || Sbjct 258 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTC 199 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 198 TTCACGAAGATCTGCAT 182 >seq37153 Length=844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||| || || | ||| || || || Sbjct 501 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGC 442 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || |||| || || ||||| || ||||| |||||||| ||||| || ||| Sbjct 441 TTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTT 382 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | |||||| | | || || || | ||| | ||||||||||||| Sbjct 381 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTC 322 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 321 AGGGTCTTCACGAAGATCTGCATA 298 >seq65093 Length=7051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| | |||| ||| ||||| || || ||| Sbjct 5042 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 5101 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| ||||| || ||||| ||| || || || Sbjct 5102 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTG 5161 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||| || | || Sbjct 5162 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 5221 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 5222 TTCACGAAGATCTGCAT 5238 >seq35527 Length=2822 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 222 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 163 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| || || || ||||| || || || || Sbjct 162 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 103 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || ||||| | || | |||||||| |||| || Sbjct 102 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCAGTCAGCGTC 43 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 42 TTGACGAAGATCTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506588298760560