Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq36668 111 1e-19 seq63813 104 2e-17 >seq36668 Length=3779 Score = 111 bits (122), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 |||||||| |||||||||||||| ||||| | ||||||| ||||||| || | | | Sbjct 2763 ACGTTGCCGAGATCGCCGACGTGACGCTCCTCATCGTCGGGTCCGCCGTGCTTCTTG-CC 2821 Query 21199 GTA-GGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 | | ||||| ||||| |||| ||| | |||||||||| || |||||||||||||||| Sbjct 2822 GAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGTG 2881 Query 21258 AACGTGAAAGCCGTG 21272 ||||| ||||| || Sbjct 2882 GACGTGGAAGCCATG 2896 >seq63813 Length=14923 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| ||||||| || | | Sbjct 6001 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCGCCGTGCTTCTTGC- 6059 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 6060 CGAAGGGGTTGAAGTGGCCGCCTGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 6119 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| ||||| || Sbjct 6120 GGACGTGGAAGCCATG 6135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414233098140802