Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq65802 86.0 7e-12 >seq65802 Length=62877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCC-GCAGTCCAAGGACATAG--CGAGAACCGAATCACCCGGC 6994 || ||||||||||| ||||| || | | ||| | ||| | | | | || |||||| Sbjct 10254 CCATGAGTGAGATGTCCGCCAGC--TGCGAGGTC-TAGGCCCATGAAGGTGTCGCCCGGC 10310 Query 6995 TTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTT 7054 | || ||| || || | || ||||| || || ||||| | || || ||||| Sbjct 10311 TGCAAGAGCGCGAGGAAGACGGCCTGATTCATCTGGCTGCCGGAGTTCGGCTGCACGTTG 10370 Query 7055 GCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCG 7114 |||||||| || |||| || || || ||||| || || ||||||||| ||||| Sbjct 10371 GCGAAATTCGCACCGAACAATTTCTTGGCGCGCTCGATGGCGAGGTTCTCGGCGACATCG 10430 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | | | || ||||| ||||| ||| ||||||||| || || |||||||| ||||| Sbjct 10431 ACGAATTCACAACCGCCGTAATAGCGTGCGCCCGGATAGCCTTCCGCATACTTATTGGTC 10490 Query 7175 AAAATAGAACCCTGTGC 7191 | | || ||||| || Sbjct 10491 ATCACCGAGCCCTGCGC 10507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556 || || ||||| ||||| || || | |||||||||||||| | || |||||||| ||| Sbjct 9825 ACAGCCTTCGCGGCGATCACGTGCATCAGCGGGCCGCCTTGCAGGCCGGGGAAGATCGCA 9884 Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 || |||| |||||||||||| | | ||||| | || || | || || || || ||| Sbjct 9885 GAGTTTATTTTCTTGGCGATGGCTTCGTCGTTGCTGAGGATCAAACCGCCGCGCGGACCG 9944 Query 6617 CGCA 6620 |||| Sbjct 9945 CGCA 9948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554896465824680