Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq66783 95.1 1e-14 seq65351 89.7 5e-13 >seq66783 Length=5056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 99555 CGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGG 99614 || || |||||| ||||| |||||||| ||||||| | ||||||||||| | || Sbjct 4640 CGTGGCGTTGAGGAGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGG 4581 Query 99615 CCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGG 99674 ||| | |||||||| | | || | | |||||||| |||| |||| ||||| Sbjct 4580 GCGCCGCCACCCGGGGATGCTGCGCTCGAGCTCGGCGTAGATCTTCTTGAGGGATGGCGG 4521 Query 99675 GATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTA 99734 | || || || || |||| ||| | |||||||||||||| | | || ||| Sbjct 4520 CACCGCCACTCCCCGAGTCACCGAGAACGAGAGGCCGTGGGCCTGATTCTCGTTGAAGTA 4461 Query 99735 GGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||||||| |||||||| || ||||| || Sbjct 4460 CGGGTCCTGCCCCAGGATCACCACCTTCAC 4431 >seq65351 Length=5474 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 99561 GTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGG 99620 |||||| ||||| |||||||| ||||||| | ||||||||||| | || ||| | Sbjct 1 GTTGAGGAGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGGGCGCCG 60 Query 99621 GGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGG 99680 || |||| | | || | | || ||||| |||| |||| |||||| | || Sbjct 61 CCAGCCAGGGATGCTGCGCTCGAGCTCGGCATAGATCTTCTTGAGGGAGGGCGGCACCGC 120 Query 99681 AACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTC 99740 || || || |||| ||||| |||||||||||||| | | || ||| ||||| Sbjct 121 GACCCCCCGAGTCACCGAGAAGGAGAGGCCGTGGGCCTGGTTCTCGTTGAAGTAAGGGTC 180 Query 99741 CTGGCCCAGGATGACGACCTTGAC 99764 ||| |||||||| || ||||| || Sbjct 181 CTGCCCCAGGATCACCACCTTCAC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440528662801080