Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq43845 116 9e-21 seq42015 111 4e-19 seq54603 104 5e-17 seq65093 98.7 2e-15 seq41198 96.9 8e-15 >seq43845 Length=2684 Score = 116 bits (128), Expect = 9e-21 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 2640 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 2581 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || || ||||| || || || || || Sbjct 2580 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 2521 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||||| | || ||||| || ||||| | Sbjct 2520 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATCG 2462 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT-TTGT 104564 |||| ||||| || || || || || ||||||||| |||| Sbjct 2461 TCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTTGT 2422 >seq42015 Length=1920 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 169 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 228 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| ||||||||||| || || || || || Sbjct 229 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 288 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||||| | || ||||| || || || | Sbjct 289 CTGAATCTTCTGC-TTGACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGG 347 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || || || || ||||||||| Sbjct 348 TCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 382 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||||||||| || || || || ||| Sbjct 2 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 61 Query 104468 TGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||| || || || || | ||| ||||| | || ||||| || ||||| || Sbjct 62 TGGATCTTCTGC-TTGACGTTCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGT 120 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 121 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 153 >seq54603 Length=2606 Score = 104 bits (114), Expect = 5e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 2521 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 2462 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 2461 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 2402 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || ||||| || || || ||||||||||| || || Sbjct 2401 -ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTACCAGTCAGGGT 2343 Query 104542 TTTTACAAATATCTGCATTTT 104562 || || || || ||||| || Sbjct 2342 CTTCACGAAGATTTGCATGTT 2322 >seq65093 Length=7051 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 5026 AAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 5085 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 5086 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 5145 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 ||||||||| ||| || || || || | || || | || | || ||||| || || || Sbjct 5146 CTGAATCTTCTGC-TTGACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATG 5203 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || || || |||||||| Sbjct 5204 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5238 >seq41198 Length=3949 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||||| || || | ||||| || || || || || Sbjct 1685 GTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 1626 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| || || || || || || ||||||||||| ||| || Sbjct 1625 GCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 1567 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || || ||||| ||||| || | Sbjct 1566 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGCG 1508 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 1507 TCTTGACGAAGATCTGCAT 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150406559151964