Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq48913 120 3e-22 seq42015 105 6e-18 seq57533 100 2e-16 seq54603 95.1 1e-14 seq65093 91.5 1e-13 seq49680 91.5 1e-13 seq37129 89.7 4e-13 seq64782 84.2 2e-11 seq63570 82.4 6e-11 seq58611 82.4 6e-11 seq41198 82.4 6e-11 >seq48913 Length=4472 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || | ||| || ||| |||||| || |||||||| || || Sbjct 736 ACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 795 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || ||||||| |||||||| ||| || | || | |||||||||||| || Sbjct 796 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 855 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| || |||||||| | | | ||||| ||| | ||||| Sbjct 856 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGAC 915 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || ||||| || || ||||| || ||||| || ||||||||||| Sbjct 916 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCGT 966 >seq42015 Length=1920 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 179 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 238 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| ||| ||| Sbjct 239 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTC 298 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||||| | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 299 TGCTTGACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 358 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 359 AGGGTCTTGACGAAGATCTGCAT 381 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| ||| || | || | |||||||||||| || | | |||||||| Sbjct 1 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 60 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || |||||||||| | | ||||| ||| | ||||| ||||| || || || Sbjct 61 CTGGATCTTCTGCTTGACGTTCTCAATGGTGTCGCTCGACTCGACCTCGAGAGTAATCGT 120 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| || || || || |||||||| Sbjct 121 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 153 >seq57533 Length=4825 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 3081 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 3140 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | || ||||||||| || ||| Sbjct 3141 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTC 3200 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || ||| | ||||| ||||| || ||||| || ||||| Sbjct 3201 TGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 3260 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 3261 AGGGTCTTCACGAAGATCTGCAT 3283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 2625 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 2684 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || ||| | || ||||||||| || ||| Sbjct 2685 TTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTC 2744 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||||| | | || || || | ||| ||||| || || || ||||||||| Sbjct 2745 TGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTG 2804 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 2805 AGAGTCTTGACGAAGATCTGCAT 2827 >seq54603 Length=2606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 2516 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2457 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | || ||||||||| || |||||||| | Sbjct 2456 GATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 2397 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 2396 CTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCAC 2337 Query 48715 AAAAATCTGCAT 48726 || || ||||| Sbjct 2336 GAAGATTTGCAT 2325 >seq65093 Length=7051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || |||| || ||||||| |||||| Sbjct 4310 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 4369 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || || | || ||||||||| || ||| Sbjct 4370 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 4429 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| |||| ||| ||||| || || || |||||||| Sbjct 4430 TGCTTCACGTTCTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTACCGGTC 4489 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 4490 AGGGTCTTGACGAAGATCTGCAT 4512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 5036 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 5095 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||||| || | | ||||||||| ||| ||| Sbjct 5096 TTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 5155 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||||| | | || || || | ||| ||||| || ||||| || || ||| Sbjct 5156 TGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTG 5215 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || ||||||||||| Sbjct 5216 AGGGTCTTCACGAAGATCTGCATCGT 5241 >seq49680 Length=1134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 841 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 900 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | ||||||||| || ||| Sbjct 901 TTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 960 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || || | ||| ||||| || || || |||||||| Sbjct 961 TGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTACCGGTC 1020 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 1021 AGGGTCTTCACGAAGATCTGCAT 1043 >seq37129 Length=1363 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 1237 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1178 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | || ||||||||| || |||||||| | Sbjct 1177 GATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1118 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | ||||| ||||| || ||||| || || || || || ||||| Sbjct 1117 CTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1058 Query 48715 AAAAATCTGCAT 48726 || || ||||| Sbjct 1057 GAAGATTTGCAT 1046 >seq64782 Length=5112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| |||||||| || | | Sbjct 2755 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 2696 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| ||| | | ||||||||| || |||||||| | Sbjct 2695 GATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 2636 Query 48655 CGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | | ||||| |||| || ||| || | |||| || ||||| || ||||| || || ||| Sbjct 2635 CTCGATGGTGTCGG-AG-CTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 2578 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 2577 ACGAAGATCTGCAT 2564 >seq63570 Length=11955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 7374 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 7315 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | |||||||||| || ||| Sbjct 7314 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTC 7255 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || || | ||| ||||| || ||||| || ||||| Sbjct 7254 TGCTTCACGTTCTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 7195 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 7194 AGCGTCTTGACGAAGATCTGCAT 7172 >seq58611 Length=1931 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 1807 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1748 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| || ||| Sbjct 1747 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTC 1688 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||||| | | || || || | ||| ||||| || ||||| || || || Sbjct 1687 TGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 1628 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 1627 AGGGTCTTCACGAAGATCTGCAT 1605 >seq41198 Length=3949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| ||| || || |||||||| ||||||| || ||||||| |||||| Sbjct 1691 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGC 1632 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| ||| | | ||||||||| ||| ||| Sbjct 1631 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 1572 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || || | ||| ||||| || ||||| || || || Sbjct 1571 TGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 1512 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 1511 AGCGTCTTGACGAAGATCTGCAT 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420906025845233