Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq47568 100 2e-16 seq66207 87.8 1e-12 >seq47568 Length=2992 Score = 100 bits (110), Expect = 2e-16 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 593 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 652 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||||||| ||||| Sbjct 653 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTTTGC-CCGTG 709 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | |||||||||||||| || ||| | |||| Sbjct 710 CCTCGACGCAAACTTGTCTCCGATCACCGGGT 741 >seq66207 Length=3124 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/145 (76%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 2532 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 2473 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 2472 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACGCCCTTCTGC-CCGTG 2416 Query 71536 AAT-GACGCAAACTTGTCGCCCATC 71559 | ||||| |||||||| || ||| Sbjct 2415 CCTCGACGCGAACTTGTCTCCGATC 2391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338487215381832