Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq36712 91.5 1e-13 seq58611 89.7 5e-13 seq35527 89.7 5e-13 seq49679 87.8 2e-12 seq65093 86.0 6e-12 seq64782 84.2 2e-11 >seq36712 Length=53282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || ||||||||||||||| | | | ||| ||||| || Sbjct 14725 CGCGCCGTGGGAGATCATGCAGTCGCGTTCCATCTCTCCGAACCTGAGACCACCGTCGCG 14784 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | |||||||| | || || | |||||| || ||| |||| || Sbjct 14785 CGATCGGCCCTCCACGGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 14843 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || || || ||||||||| ||||||||||||| Sbjct 14844 GGATCTTATCGTCCACCATGTGCTTCAGTCTCTGGTA 14880 >seq58611 Length=1931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| | ||||| ||||| || ||| Sbjct 1801 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1742 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| || || || ||||| ||||| | || || |||| Sbjct 1741 GCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCTGCTTG 1682 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | |||||||| || ||||| || || Sbjct 1681 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1622 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 1621 TTCACGAAGATCTGCAT 1605 >seq35527 Length=2822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| | ||||| ||||| || ||| Sbjct 222 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 163 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||||| ||||||||||| || ||||| | || || ||| Sbjct 162 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 103 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | || ||||| || ||||| || || Sbjct 102 ACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTAATGGTCTTGCCAGTCAGCGTC 43 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 42 TTGACGAAGATCTGCATGC 24 >seq49679 Length=1067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| | ||| | ||||| ||||| Sbjct 848 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTG 907 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | | ||||| || |||||||| || || ||||| | || || Sbjct 908 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTT 967 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||| ||| ||||| | | ||||| || | |||||||| || ||||| Sbjct 968 CTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCAGT 1027 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 1028 CAGCGTCTTGACGAAGATCTGCATGC 1053 >seq65093 Length=7051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| ||||| || || || ||| Sbjct 5084 TCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTG 5143 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||| ||| ||||| | | ||||| || | |||||| Sbjct 5144 TCCTGAATCTTCTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATG 5203 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 5204 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5238 >seq64782 Length=5112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| || ||| || ||| | ||||| ||||| || || Sbjct 2760 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2701 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||||| || || || || || ||||| | || || ||| Sbjct 2700 GCAAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 2641 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | |||||||| || || || || || Sbjct 2640 ACGTTCTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 2581 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 2580 TTCACGAAGATCTGCATGC 2562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447914450471880