Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq63825 132 8e-27 seq48573 132 8e-27 seq64938 116 6e-22 seq66247 107 3e-19 seq37310 102 1e-17 >seq63825 Length=1805 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || |||||||| || |||||| | || ||||| || ||| Sbjct 1143 CTCCGCGACAACATCCAGGGTATTACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1202 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1203 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 1262 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || | ||| ||||||||||| | ||||| ||| Sbjct 1263 CTCGAGAACGTTATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 1322 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 1323 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 1363 >seq48573 Length=2670 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1138 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1197 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1198 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 1257 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 1258 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 1317 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || | || ||||| Sbjct 1318 ACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 1358 >seq64938 Length=3151 Score = 116 bits (128), Expect = 6e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1489 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1548 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1549 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 1608 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 1609 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 1652 Score = 104 bits (114), Expect = 4e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 16483 GCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 ||| || |||||| | || ||||| || ||||| ||||||||| |||| || || |||| Sbjct 1719 GCCCGCCATCCGTAGGCTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTA 1778 Query 16543 TGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA 16602 ||||||| || | || | ||| |||||||| ||| ||| |||| || || | Sbjct 1779 CGAAGAGACCCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGAC 1838 Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| ||||||||||| | ||||| ||||| ||||||| ||||||| || | || Sbjct 1839 CTACACCGAGCACGCACGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAA 1898 Query 16663 ACGTCAAGGCCG 16674 | || ||||| Sbjct 1899 GAGGCAGGGCCG 1910 >seq66247 Length=3338 Score = 107 bits (118), Expect = 3e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 2364 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 2305 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 2304 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 2245 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 2244 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 2201 >seq37310 Length=777 Score = 102 bits (112), Expect = 1e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 131 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 72 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 71 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 12 Query 16574 CTCAAGACCGT 16584 ||| ||| ||| Sbjct 11 CTCGAGAACGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79013728397469