Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq64170 89.7 6e-13 seq38569 82.4 1e-10 >seq64170 Length=188469 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGT 165276 |||||| ||||||||||||||||||||||||| || |||| |||||| |||| ||| Sbjct 95735 TGCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGT 95794 Query 165277 GGAGGTTCAAGTCCTCTCTTGGGCAC 165302 | |||||| |||||| || ||||||| Sbjct 95795 GAAGGTTCGAGTCCTTTCCTGGGCAC 95820 >seq38569 Length=123680 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165226 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTCA 165285 ||||||||| ||||||||||||||||||||||||||||||| || | |||| ||||| Sbjct 110980 GTGGCGGAACTGGTAGACGCGCTGGGTTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCG 110921 Query 165286 AGTCC 165290 ||||| Sbjct 110920 AGTCC 110916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627440247843200