Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq41482 127 3e-24 >seq41482 Length=37866 Score = 127 bits (140), Expect = 3e-24 Identities = 368/565 (65%), Gaps = 6/565 (1%) Strand=Plus/Plus Query 193631 GGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTT 193690 || |||| | || | |||||| |||||||| | || || || ||||| ||||| || Sbjct 12305 GGAAGTTCAGCCGGATGAGATTTATAATCTCGCCGCGCAGAGCCATGTCGCGGTTTCGTT 12364 Query 193691 TGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGC 193750 || ||| |||||||| | ||| ||||| | || | || | || || ||||| Sbjct 12365 CGAAGAGCCTGAGTATACCGCCAATTCGGATGCGCTCGGTCCGCTGCGTATTCTCGAAGC 12424 Query 193751 AGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACT 193810 | || || | ||| | ||||| | || | |||||||| || || || || Sbjct 12425 GATCCGCATTCTCGGACTTGAGAAGAAGACCCGATTTTATCAGGCCTCGACTTCTGAGCT 12484 Query 193811 GTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCC 193870 ||| || |||| | ||||| | ||||| || |||||| | || | || || Sbjct 12485 GTACGGACTCGTTCAGGAAACTCCTCAGAAGGAAACGACGCCATTTTACCCCAGATCGCC 12544 Query 193871 TTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGG 193930 |||| || || ||| |||| | || ||||||| ||| ||||| ||| | ||||| Sbjct 12545 GTATGCGGTCGCCAAGCTGTACGCATACTGGATCACTGTGAACTATCGCGAGGCTTATGG 12604 Query 193931 ATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATT 193990 | ||| | || ||||| |||||||| ||||| || | | || ||||| || Sbjct 12605 CCTGTTCGCGTGCAACGGCATTCTTTTCAATCATGAATCGCCGATCCGCGGAGAGACCTT 12664 Query 193991 TGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCT 194050 || || || || ||||| | | ||| | ||| | || | ||| ||| | Sbjct 12665 CGTTACGCGAAAAATTACGCGCGCTTTGGCGCGCATCAAGCTCGGGCTTCAGGAGAGGGT 12724 Query 194051 TTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGC 194110 ||||| || || || ||||| | | |||||||||||||| ||||| ||||| Sbjct 12725 CTATCTCGGAAACCTGAATGCGCTGCGCGATTGGGGACACGCGCGTGATTACGTTGA--- 12781 Query 194111 GATG---TGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 |||| ||| |||||||| ||||||| | | || ||||| || || || || || || Sbjct 12782 GATGCAATGGCGGATGTTGCAGCAGGATGTAGCAGAGGATTACGTCATCGCGACCGGCGA 12841 Query 194168 ACAGTATTCTGTTAGAGACTTTGTG 194192 |||| | || || | || ||| || Sbjct 12842 ACAGCACTCCGTCCGCGAGTTTCTG 12866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806876520515480