Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq38237 111 6e-20 >seq38237 Length=22261 Score = 111 bits (122), Expect = 6e-20 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 7541 TATTCCGGCTCTTCGGCTACGCGGGGACGGGCAAGACCACGCTGGCCAAGCACCTGGCCG 7600 |||||||||| |||||||| || || || ||||||||||||||||| ||| | || | Sbjct 15660 TATTCCGGCTGTTCGGCTATGCCGGAACCGGCAAGACCACGCTGGCGCGGCATATCGCGG 15719 Query 7601 AGGGCGTCTCGGGCCGAGTGAAGTTCGCCGCGTACACTGGCAAGGCGGCCCAGGTCCTCA 7660 | |||||| ||| |||||||||||||| | ||| ||||||||||| | |||| | Sbjct 15720 ACGGCGTCAACGGCAACGTGAAGTTCGCCGCTTTCACGGGCAAGGCGGCGCTGGTCATGC 15779 Query 7661 GCGAGAAGGGCTGC 7674 || | ||||||||| Sbjct 15780 GCAACAAGGGCTGC 15793 Score = 96.9 bits (106), Expect = 1e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 7921 GTCGTTGACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCGAC 7980 ||| | ||||| ||||||||||| ||| | | | || | ||||| | || ||||| Sbjct 15905 GTCATCGACGAATGTTCGATGGTGGACGCGGAATTGGGCCGTGACCTGATGTCGTTCGAT 15964 Query 7981 GTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTC 8040 ||| | || ||||| ||||| ||||| ||| | ||||| || ||| || ||||| Sbjct 15965 TGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATCCAGGGCGGCGGCTTT 16024 Query 8041 TTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAAC 8100 ||||| || ||| | |||||| |||||| || || | ||||| ||||| ||||| | Sbjct 16025 TTCACCGATGCCGAACCGGACGCGATGCTCACCGAGGTTCACCGTCAGGCGCAGGACGAT 16084 Query 8101 CCCATC 8106 || ||| Sbjct 16085 CCGATC 16090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203385209045930