Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq54603 100 3e-16 seq37129 100 3e-16 seq64782 96.9 3e-15 seq63570 96.9 3e-15 seq42015 96.9 3e-15 seq65788 95.1 1e-14 seq48913 95.1 1e-14 seq43845 95.1 1e-14 seq41198 93.3 4e-14 seq66251 89.7 5e-13 seq57533 89.7 5e-13 >seq54603 Length=2606 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | ||||| || | |||||| |||| | || || Sbjct 2322 AACATGCAAATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGTCG 2381 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || || ||||| ||||| || || || || || ||| Sbjct 2382 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGAT 2441 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || |||||| || ||||| || | | | || |||||| Sbjct 2442 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTAC 2501 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 2502 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 2536 >seq37129 Length=1363 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || | ||||| || | |||||| |||| | || || Sbjct 1043 AACATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 1102 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || || ||||| ||||| || || || || || ||| Sbjct 1103 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGAT 1162 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || |||||| || ||||| || | | | || |||||| Sbjct 1163 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTAC 1222 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 1223 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 1257 >seq64782 Length=5112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | || || || | |||||| |||| | || || | Sbjct 2335 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 2394 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || |||||||| ||||| || || || ||||| || || Sbjct 2395 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 2454 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | | | |||||| || Sbjct 2455 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTAGCCGACTACAA 2514 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| |||| || ||||| Sbjct 2515 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 2547 >seq63570 Length=11955 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | || || || | |||||| |||| | || || | Sbjct 6679 AATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 6738 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 6739 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 6798 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | | | |||||| || Sbjct 6799 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 6858 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| |||| || ||||| Sbjct 6859 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 6891 >seq42015 Length=1920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 382 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 323 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| || |||||| ||||| || || || ||||| ||||| Sbjct 322 CGACACCATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 263 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | | | |||||| || Sbjct 262 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 203 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || || || Sbjct 202 CATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 170 >seq65788 Length=3562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| ||||| | || || | | Sbjct 998 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCGAGC 1057 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 1058 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 1117 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 1118 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1177 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 1178 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 1209 >seq48913 Length=4472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || || | | Sbjct 963 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 904 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || || |||||||| Sbjct 903 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAG 844 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 843 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 784 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || ||||||| || || Sbjct 783 ATCCAGAAGGAGTCCACGCTCCATCTCGTTCT 752 >seq43845 Length=2684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 26763 AACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||||| |||||| | || || || || | ||||| || |||| ||| |||| | || Sbjct 2421 AACAACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTCGAGGTCGA 2480 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 || | ||||||||||||| | || || || |||||| ||||| || || || ||||| Sbjct 2481 GTCGAGCGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCC 2540 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||| || || | ||||| | || ||||| || ||||| || | | | | | ||| Sbjct 2541 CGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGA 2600 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || || || || || |||| || || || Sbjct 2601 CTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 2639 >seq41198 Length=3949 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 |||| |||||| | ||||| || || | || || || | |||||| ||||| | || Sbjct 1254 AAACGCAATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAAGTCGA 1313 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 || | ||||||||||||| | || || || ||||| ||||| || || || ||||| Sbjct 1314 GTCGAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCC 1373 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||| || || | ||||| | || |||||| || ||||| || | | | | | ||| Sbjct 1374 CGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGA 1433 Query 26942 CTATAACATTCAAAAAGAATC 26962 ||| ||||| || || || || Sbjct 1434 CTACAACATCCAGAAGGAGTC 1454 >seq66251 Length=5749 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| |||| | || || | | Sbjct 2947 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATTACCCTCGAGGTCGAGTCTAGC 3006 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 3007 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 3066 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | || |||||| ||| Sbjct 3067 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 3126 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 3127 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 3158 >seq57533 Length=4825 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || ||||||| |||| | || || | | Sbjct 2599 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCGAGC 2540 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || || || || || Sbjct 2539 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2480 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | | |||||| ||| Sbjct 2479 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2420 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 2419 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478260126135760