Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq64558 127 1e-24 seq62782 127 1e-24 seq62426 105 4e-18 seq36806 105 4e-18 seq37153 98.7 7e-16 seq57533 84.2 1e-11 seq66251 82.4 5e-11 >seq64558 Length=8841 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 7441 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 7500 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7501 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7535 >seq62782 Length=3051 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 1651 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 1710 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1711 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1745 >seq62426 Length=1886 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 662 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 603 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 602 GCTGACAATATTTAGCCTT 584 >seq36806 Length=666 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 610 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 551 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 550 GCTGACAATATTTAGCCTT 532 >seq37153 Length=844 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| |||||| || || ||||| || | || ||| |||| || | || Sbjct 501 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGC 442 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || || || | |||| |||||| |||||| || ||| Sbjct 441 TTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTT 382 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || || || | || || || || | ||||| || || || | Sbjct 381 TGCTTCACGTTCTCGATCGTGTCGGACGAC--TCGACCTCGAGAGTAATCGTCTTGCCGG 324 Query 38293 TCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| |||||||| |||||||| Sbjct 323 TCAGGGTCTTCACGAAGATCTGCAT 299 >seq57533 Length=4825 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | || || ||| |||||| || || ||||| || | Sbjct 2827 TACCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 2886 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || |||| || | || || || || || || || || || ||||||| || Sbjct 2887 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGG 2946 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| || ||||||||||| |||| || || || || || | Sbjct 2947 GAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGA 3006 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| || || || || | ||| || ||||| |||||||| Sbjct 3007 CTTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 3055 >seq66251 Length=5749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | || || || || || || ||||| || || || | |||| ||| || | Sbjct 2803 CGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCT 2744 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| ||| ||||||||||| |||| || || || || || || || | || | Sbjct 2743 TGTCCTGAATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGA 2684 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || |||| ||| |||||||| ||||||||| Sbjct 2683 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334672743531623