Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq36712 93.3 5e-14 >seq36712 Length=53282 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||| ||||||||||| | || | ||||| |||||||| ||| ||||| Sbjct 15436 ACGCCCCAGATCGGCGACAAGTTCAGTTCGCGCCATGGC-CAAAAGGGTACGGTGGGCAT 15378 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||| ||| | Sbjct 15377 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATCATCGT 15318 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 15317 CAACCCGCACGCCATTCCCTCGCGTATGACCAT 15285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || || || || ||||| || |||| || |||||||| | || ||||| ||| || Sbjct 14898 TTCATCGGGCCCACCTACTACCAGAGACTGAAGCACATGGTGGACGATAAGATCCACTCG 14839 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | |||| || ||| | |||||| || ||||||| | | Sbjct 14838 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCGCGAC 14779 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || |||||||||||| |||||||| | |||||||| |||| Sbjct 14778 GGTGGTCTCAGGTTCGGAGAGATGGAACGCGACTGCATGATCTCCCACGGCGCGGCCCAG 14719 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 14718 TTCCTCAAGGAGCG 14705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610878178520800