Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37095 107 2e-18 seq57661 105 7e-18 seq42187 105 7e-18 >seq37095 Length=1954 Score = 107 bits (118), Expect = 2e-18 Identities = 402/625 (64%), Gaps = 14/625 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||| || | || ||||| || |||| ||| || ||||| | | Sbjct 1688 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1629 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 || || | ||| || || |||||||||||||| | || |||| || || || || || | Sbjct 1628 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGA 1570 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA------T 93263 | || || || ||||| || ||| | | | || ||||| || | ||| | | Sbjct 1569 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 1510 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || ||||||| || | ||||| |||||||| ||||| | | || | || |||| Sbjct 1509 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 1450 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | ||| || ||| || |||| | || | ||| || ||||| | || | Sbjct 1449 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 1390 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||||| || || |||| ||||| || || |||||||| |||||||| || | || | Sbjct 1389 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 1330 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | | ||| || || || | | |||| || || || || || ||| Sbjct 1329 CGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGC 1270 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 || || || || |||| | ||||| || || || |||| || | | ||| | Sbjct 1269 TGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATT 1210 Query 93564 CCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 |||| | | | || | || ||||||||||||||| | ||||| || || || | Sbjct 1209 CCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCT 1153 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | || || |||||||| ||||| ||| || | | || || || | || || || | Sbjct 1152 CGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATCGGT 1093 Query 93681 TAGGGTTATCTTTTAGTAACGGCTC 93705 | ||||| || | || | |||||| Sbjct 1092 TGGGGTTCTCCTCGAGCAGCGGCTC 1068 >seq57661 Length=1717 Score = 105 bits (116), Expect = 7e-18 Identities = 366/566 (65%), Gaps = 14/566 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||| || | || ||||| || |||| ||| || ||||| | | Sbjct 1135 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1194 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 || || | ||| || || |||||||||||||| | || |||| || || || || || | Sbjct 1195 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGA 1253 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA------T 93263 | || || || ||||| || ||| | | | || ||||| || | ||| | | Sbjct 1254 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 1313 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || ||||||| || | ||||| |||||||| ||||| | | || | || |||| Sbjct 1314 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 1373 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | ||| || ||| || |||| | || | ||| || ||||| | || | Sbjct 1374 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 1433 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||||| || || |||| ||||| || || |||||||| |||||||| || | || | Sbjct 1434 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 1493 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | | ||| || || || | | |||| || || || || || ||| Sbjct 1494 CGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGC 1553 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 || || || || |||| | ||||| || || || |||| || | | ||| | Sbjct 1554 TGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATT 1613 Query 93564 CCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 |||| | | | || | || ||||||||||||||| | ||||| || || || | Sbjct 1614 CCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCT 1670 Query 93621 CTGCTTTTTTGTACATATCCCATATG 93646 | || || |||||||| ||||| ||| Sbjct 1671 CGGCCTTCTTGTACATCTCCCAGATG 1696 >seq42187 Length=1775 Score = 105 bits (116), Expect = 7e-18 Identities = 366/566 (65%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||| || | || ||||| || |||| ||| || ||||| | | Sbjct 583 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 524 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaa 93209 || || | ||| || || |||||||||||||| | || |||| || || || || || | Sbjct 523 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGA 465 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA------T 93263 | || || || ||||| || ||| | | | || ||||| || | ||| | | Sbjct 464 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 405 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || ||||||| || | ||||| |||||||| ||||| | | || | || |||| Sbjct 404 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 345 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | ||| || ||| || |||| | || | ||| || ||||| | || | Sbjct 344 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 285 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||||| || || |||| ||||| || || |||||||| |||||||| || | || | Sbjct 284 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 225 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | | ||| || || || | | |||| || || || || || ||| Sbjct 224 CGGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGC 165 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 || || || || |||| | ||||| || || || |||| || | | ||| | Sbjct 164 TGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATT 105 Query 93564 CCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 |||| | | | || | || ||||||||||||||| | ||||| || || || | Sbjct 104 CCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCT 48 Query 93621 CTGCTTTTTTGTACATATCCCATATG 93646 | || || |||||||| ||||| ||| Sbjct 47 CGGCCTTCTTGTACATCTCCCAGATG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556392807222920