Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq42015 93.3 3e-14 seq37153 91.5 1e-13 seq64782 87.8 1e-12 seq57533 87.8 1e-12 seq48913 86.0 5e-12 seq41198 84.2 2e-11 >seq42015 Length=1920 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 154 ACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 213 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 214 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGG 273 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 274 GATGCCCTCCTTGTCCTGAATCTTCTGCTTGA-CGTTCTCGATGGTGTCGCTCGACTCGA 332 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || ||||| || || || || ||||| |||||| Sbjct 333 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 382 >seq37153 Length=844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| ||| ||||||||| |||||||| || Sbjct 529 GAAACCGCCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 470 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| || | ||||||||||| || || ||||||||||| || Sbjct 469 GGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 410 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 || | || || |||||| || |||||||| | | ||| | | || | || | Sbjct 409 AGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATCGTGTCGGACGACT 351 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 350 CGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 299 >seq64782 Length=5112 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 2790 CCACCGCGCAGTCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2731 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||| ||||| || |||||||||||||| ||| Sbjct 2730 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGCGGG 2671 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TCGC 34078 | || ||| |||||| || || ||||| | | ||| | | || | || | ||| Sbjct 2670 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTC-GGAGCTCTCGA 2613 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 2612 CTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2564 >seq57533 Length=4825 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 3056 ACCGCCACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3115 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 3116 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 3175 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 3176 GATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTCGACTCGA 3234 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || ||||| || || ||||| ||||| |||||| Sbjct 3235 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 3284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 2373 CCACCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 2432 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 2433 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 2492 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 2493 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGAC 2551 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 2552 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2599 >seq48913 Length=4472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || ||||| |||||| ||||||||| |||||||| || || Sbjct 736 ACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 795 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || || ||||||||||| || Sbjct 796 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 855 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 856 GATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGA 914 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || || ||||| ||||| ||||| Sbjct 915 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 963 >seq41198 Length=3949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||| ||||| |||||||| || ||| Sbjct 1715 CCACCGCGCAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 1656 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| ||| Sbjct 1655 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGG 1596 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 1595 ATGCCCTCCTTGTCCTGAATCTTCTGCTT 1567 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33936 CTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAA 33995 ||||||||| |||||||| || |||| || |||| || | ||||||||||| || Sbjct 1452 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1393 Query 33996 TATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGA 34055 || || |||||||| || || | || ||| |||||| || || ||||| | | Sbjct 1392 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 1334 Query 34056 ACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCA 34114 ||| | | || | || ||| ||||| || || || || ||||| || || |||| Sbjct 1333 TCTCGATGGTGTCGCTCGACTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 1274 Query 34115 CAAAGATTTGCATT 34128 ||||||| |||||| Sbjct 1273 CAAAGATCTGCATT 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396737046200866